nf-core / nf-core/funcprofiler
Add support for custom shortBRED annotation/custom DBs?
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 3
- Forks
- 5
- Avg merge
- 2d 23m
- Merged PRs (30d)
- 1
Description
Adds support for ShortBRED annotation using custom shortBRED database (note requires shortBRED module to be created).
I originally thought the databases file was formatted differently, I think the shortBRED database should work with the current format.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the current databases file format and how annotation modules are organized, then determine what the required shortBRED module needs. The work is complete when ShortBRED annotation accepts a custom shortBRED database and the existing database format remains compatible.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100