restore mkfg file from CUSTOM_SRATOOLSNCBISETTINGS / FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS
Open
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bug
- Dominant language
- Nextflow
- Stars
- 202
- Forks
- 93
- Avg merge
- 1d 18m
- Merged PRs (30d)
- 15
Description
Description of the bug
to fix in modules repo when switching to workflow output
Command used and terminal output
Relevant files
No response
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start in the modules repository and trace the workflow-output path related to CUSTOM_SRATOOLSNCBISETTINGS and FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS. Identify where the mkfg file is expected to be restored, then verify that switching to workflow output preserves the relevant settings and restores the file as described.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100