Support for GSA accessions
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 202
- Forks
- 93
- Avg merge
- 1d 18m
- Merged PRs (30d)
- 15
Description
Description of feature
Would it be possible to support fetching data/metadata using GSA accessions (CRR/CRX/CRS/CRA)? E.g., CRR1164885
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. Start by tracing how fetchngs currently accepts SRA, ENA, GEO, or other accession types, then identify the metadata and raw FASTQ fetch paths; done means CRR, CRX, CRS, and CRA accessions such as CRR1164885 are supported for both data and metadata.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100