FEAT: Pass scientific name as input to download the data
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Description
For Example, I want to get the data with keywords " lung cancer", "WES"
It is same like SRA explorer does, we just feed the keywords and get the ftp urls to download the data. Does fetchngs pipeline has this feature?
cf https://nfcore.slack.com/archives/C024915L4KB/p1698913937015109
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
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Research direction
Start by reviewing the fetchngs pipeline's existing input methods and the linked SRA Explorer example. Determine whether keyword searches such as "lung cancer" and "WES" can be supported, and define done as accepting scientific-name keywords and returning the corresponding FTP URLs for download.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering, databases
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100