Create test datasets for nf-core/fastquorum
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enhancement
help wanted
- Dominant language
- Nextflow
- Stars
- 29
- Forks
- 16
- Avg merge
- 5d 36m
- Merged PRs (30d)
- 1
Description
Description of feature
A new duplex sequencing dataset will come out of embargo on February 24th (accession: PRJNA913202). We'll want to add it to https://github.com/nf-core/test-datasets and create an end-to-end test here.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by checking the nf-core/test-datasets repository for accession PRJNA913202 and the existing end-to-end test conventions in nf-core/fastquorum. The work is done when the duplex sequencing dataset is added and an end-to-end test uses it successfully.
Written by the indexing model from the issue text.
Assessment
- Domain
- testing
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100