DSL2: Print Nuclear Contamination JSON `N/A` value
Open
Nobody has claimed this yet.
bug
DSL2
- Dominant language
- Nextflow
- Stars
- 215
- Forks
- 91
- Avg merge
- 5m
- Merged PRs (30d)
- 1
Description
The print nuclear contaminatino script produces a JSON with the results, in which the na value is set to "N/A". This should be replaced with a valid JSON missing value (null?) so that loading of the JSON for downstream processing does not raise errors (strings vs floats).
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue does not name the script file; search the repository for the nuclear-contamination printer and its na JSON field. Read the relevant script and run its available output check, then verify the missing value is valid JSON and downstream loading no longer treats it as a string among numeric results.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- json
- Domain
- bioinformatics, data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100