nf-core / nf-core/demultiplex

Add a custom config for multiqc to combine _R1 and _R2 into the same row.

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enhancement good first issue
Dominant language
Nextflow
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60
Forks
55
Avg merge
18h 53m
Merged PRs (30d)
9

Description

Description of feature

Currently the multiqc output looks like:

Image It would be useful if these were merged together using a custom config.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the pipeline's MultiQC configuration and the entry point that assembles the current report shown in the issue. Verify how _R1 and _R2 sample names are represented, then confirm that the custom configuration produces one row containing both results.

Written by the indexing model from the issue text.

Assessment

Domain
data
Issue type
Feature
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
55/100

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