Update nf-core/modules/mageck/count
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enhancement
- Dominant language
- Nextflow
- Stars
- 63
- Forks
- 39
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
Update the module mageck count that only has a patch in crisprseq and needs updating here :
https://github.com/nf-core/modules/blob/master/modules/nf-core/mageck/count/main.nf
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by comparing the nf-core/modules/mageck/count/main.nf module linked in the issue with the corresponding mageck count implementation in crisprseq. Identify the patch that exists only in crisprseq, apply the needed module update here, and verify that the module matches the current nf-core version.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 25/100