UMI steps to subworkflows
Open
Nobody has claimed this yet.
enhancement
good-first-issue
- Dominant language
- Nextflow
- Stars
- 63
- Forks
- 39
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
The newly added UMI clustering steps in crisprseq targeted can be added to nf-core/modules as a subworkflow.
Have a look at:
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the UMI clustering steps in the crisprseq targeted workflow and compare them with the FastQuorum and fastq_create_umi_consensus_fgbio subworkflow documentation linked in the issue. Confirm the expected nf-core/modules subworkflow structure and check that the targeted workflow still uses the extracted steps; done means the UMI processing is represented as a reusable subworkflow.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100