nf-core / nf-core/crisprseq

Add spikes functionality

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enhancement
Dominant language
Nextflow
Stars
63
Forks
39
PR merge metrics
No merged PRs in 30d

Description

Description of feature

Add the functionality to analyse samples with spike ins in order to remove noise from the results.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

No files, tests, or entry points are named. Start by reviewing the targeted and screening workflows to determine where spike-in samples and noise analysis belong; done should mean the pipeline can analyse spike-in samples and remove the intended noise from its results.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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