Consider database reduction options
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 22
- Forks
- 13
- Avg merge
- 8d 5h
- Merged PRs (30d)
- 3
Description
Description of feature
E.g. using Galah or derep to remove highly similar genomes
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files, tests, or entry points. Start by researching how Galah and derep could remove highly similar genomes, then clarify the desired workflow, configuration, and acceptance criteria before locating the relevant pipeline entry point.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, databases
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100