nf-core / nf-core/createpanelrefs
Investigate `fast-mode` usage in gens subworkflow
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enhancement
- Dominant language
- Nextflow
- Stars
- 11
- Forks
- 16
- PR merge metrics
- No merged PRs in 30d
Description
keep in mind that fast-mode overestimates coverage
Originally posted by @matthdsm in https://github.com/nf-core/createpanelrefs/pull/85#discussion_r3362640515
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the gens subworkflow and locate how fast-mode is used. Investigate the reported coverage overestimate and determine whether the usage is incorrect or needs adjustment; done means the behavior and any required change are clearly established.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-engineering
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100