nf-core / nf-core/createpanelrefs
Investigate method for cnvkit_batch
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enhancement
- Dominant language
- Nextflow
- Stars
- 11
- Forks
- 16
- PR merge metrics
- No merged PRs in 30d
Description
Do we want to hard code this or use a param?
Originally posted by @matthdsm in https://github.com/nf-core/createpanelrefs/pull/85#discussion_r3362635563
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue only identifies cnvkit_batch and asks whether its method should be hard-coded or parameterized. Locate the cnvkit_batch definition and inspect how the method is currently selected. Done means reaching and documenting a clear decision, with the relevant implementation and tests identified.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100