nf-core / nf-core/clipseq

alternative motifs to peka (homer,streme)

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Dominant language
Nextflow
Stars
26
Forks
43
PR merge metrics
No merged PRs in 30d

Description

This issue has no description.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

The issue provides no files, tests, or entry points. Start by clarifying which alternative motif or peak-calling behavior is wanted for HOMER or STREME, then locate the pipeline's existing peak-calling configuration and define completion criteria.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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