nf-core / nf-core/clipseq

Conda env fails to create

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bug
Dominant language
Nextflow
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Description

Check Documentation

I have checked the following places for your error:

Description of the bug

The conda environment fails to create both with nextflow and by itself.

Steps to reproduce

Steps to reproduce the behavior:
for the documented install process:

`conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge

conda create --name env_nf nextflow`

for just trying the clipseq conda environment

conda env create -f clipseq/environment.yml -n clipseq

Expected behaviour

conda environment creates successfully

Log files

Have you provided the following extra information/files:

  • The command used to run the pipeline
  • The .nextflow.log file

System

  • Hardware:
  • Executor:
  • OS:
  • Version

Nextflow Installation

  • Version:

Container engine

  • Engine:
  • version:
  • Image tag:

Additional context

after just trying to create the base conda image i get

`Collecting package metadata (repodata.json): done
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
Building graph of deps: 0%| Examining conda-forge::pigz=2.3.4: 0%| Examining bioconda::fastqc=0.11.9: 4%|███████▉ Examining @/linux-64::__archspec==x86_64=0: 8%|███████████████▏ Examining bioconda::preseq=2.0.3: 12%|████████████████████████ Examining bioconda::pureclip=1.3.1: 16%|███████████████████████████████▋ Examining bioconda::pureclip=1.3.1: 20%|███████████████████████████████████████▌ Examining conda-forge::python=3.7.3: 20%|███████████████████████████████████████▍ Examining bioconda::samtools=1.11: 24%|███████████████████████████████████████████████▊ Examining bioconda::umi_tools=1.1.1: 28%|███████████████████████████████████████████████████████▏ Examining @/linux-64::__glibc==2.31=0: 32%|██████████████████████████████████████████████████████████████▍ Examining @/linux-64::__glibc==2.31=0: 36%|██████████████████████████████████████████████████████████████████████▏ Examining bioconda::star=2.6.1d: 36%|████████████████████████████████████████████████████████████████████████▎ Examining bioconda::cutadapt=3.0: 40%|███████████████████████████████████████████████████████████████████████████████▌ Examining bioconda::piranha=1.2.1: 44%|███████████████████████████████████████████████████████████████████████████████████████ Examining bioconda::piranha=1.2.1: 48%|███████████████████████████████████████████████████████████████████████████████████████████████ Examining bioconda::bowtie2=2.4.2: 48%|███████████████████████████████████████████████████████████████████████████████████████████████ Examining conda-forge::pygments=2.5.2: 52%|████████████████████████████████████████████████████████████████████████████████████████████████████▉ Examining conda-forge::pygments=2.5.2: 56%|████████████████████████████████████████████████████████████████████████████████████████████████████████████▋ Examining bioconda::subread=2.0.1: 56%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████▉ Examining bioconda::paraclu=9: 60%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ Examining bioconda::paraclu=9: 64%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▎ Examining bioconda::rseqc=4.0.0: 64%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████ Examining @/linux-64::__linux==5.4.0=0: 68%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ Examining @/linux-64::__linux==5.4.0=0: 72%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▉ Examining bioconda::bedtools=2.29.2: 72%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████ Examining conda-forge::perl=5.26.2: 76%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▋Examining bioconda::meme=5.1.1: 80%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining bioconda::meme=5.1.1: 84%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining bioconda::icount=2.0.0: 84%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conda-forge::pymdown-extensions=6.0: 88%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conda-forge::pymdown-extensions=6.0: 92%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining bioconda::multiqc=1.9: 92%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining bioconda::multiqc=1.9: 96%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conda-forge::markdown=3.1.1: 96%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conda-forge::markdown=3.1.1: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████ Determining conflicts: 0%| Examining conflict for pigz cutadapt icount: 0%| Examining conflict for pigz fastqc preseq pureclip python samtools umi_tools cutadapt piranha bowtie2 pygments subread paraclu rseqc bedtools meme icount pymdown-extensions multiqc markdown: Examining conflict for pigz fastqc preseq pureclip python samtools umi_tools cutadapt piranha bowtie2 pygments subread paraclu rseqc bedtools meme icount pymdown-extensions multiqc markdown: Examining conflict for cutadapt piranha bowtie2 samtools pigz umi_tools subread bedtools perl paraclu rseqc meme __glibc preseq python: 8%|███████▊ Examining conflict for cutadapt piranha bowtie2 samtools pigz umi_tools subread bedtools perl paraclu rseqc meme __glibc preseq python: 12%|███████████▊ Examining conflict for cutadapt piranha bowtie2 samtools pigz umi_tools subread bedtools perl paraclu rseqc meme preseq python: 12%|████████████▋ Examining conflict for cutadapt piranha bowtie2 samtools pigz umi_tools subread bedtools perl paraclu rseqc meme preseq python: 16%|████████████████▉ Examining conflict for pigz fastqc preseq pureclip python samtools umi_tools cutadapt piranha bowtie2 pygments subread paraclu rseqc bedtools perl meme icount pymdown-extensions multiqc markdExamining conflict for pigz fastqc preseq pureclip python samtools umi_tools cutadapt piranha bowtie2 pygments subread paraclu rseqc bedtools perl meme icount pymdown-extensions multiqc markdExamining conflict for fastqc pureclip meme: 20%|█████████████████████████████████████▊ Examining conflict for fastqc pureclip meme: 24%|█████████████████████████████████████████████▎ Examining conflict for umi_tools icount fastqc rseqc multiqc: 24%|█████████████████████████████████████████▎ Examining conflict for umi_tools icount fastqc rseqc multiqc: 28%|████████████████████████████████████████████████▏ Examining conflict for fastqc bowtie2: 28%|██████████████████████████████████████████████████████▌ Examining conflict for fastqc bowtie2: 32%|██████████████████████████████████████████████████████████████▍ Examining conflict for fastqc rseqc: 32%|███████████████████████████████████████████████████████████████ Examining conflict for fastqc rseqc: 36%|██████████████████████████████████████████████████████████████████████▉ Examining conflict for umi_tools meme icount fastqc rseqc pureclip multiqc: 36%|████████████████████████████████████████████████████████▉ Examining conflict for umi_tools meme icount fastqc rseqc pureclip multiqc: 40%|██████████████████████████████████████████████████████████████▊ Examining conflict for fastqc pureclip rseqc meme: 40%|████████████████████████████████████████████████████████████████████████▊ Examining conflict for fastqc pureclip rseqc meme: 44%|████████████████████████████████████████████████████████████████████████████████ Examining conflict for bowtie2 perl meme fastqc pureclip: 44%|█████████████████████████████████████████████████████████████████████████████ Examining conflict for bowtie2 perl meme fastqc pureclip: 48%|████████████████████████████████████████████████████████████████████████████████████ Examining conflict for cutadapt bowtie2 pygments umi_tools meme icount fastqc rseqc pymdown-extensions multiqc markdown: 48%|█████████████████████████████████████████████████████▊ Examining conflict for cutadapt bowtie2 pygments umi_tools meme icount fastqc rseqc pymdown-extensions multiqc markdown: 52%|██████████████████████████████████████████████████████████▏ Examining conflict for cutadapt piranha bowtie2 samtools umi_tools pygments bedtools meme icount paraclu fastqc rseqc pymdown-extensions multiqc preseq pureclip python markdown: 52%|████████Examining conflict for cutadapt piranha bowtie2 samtools umi_tools pygments bedtools meme icount paraclu fastqc rseqc pymdown-extensions multiqc preseq pureclip python markdown: 56%|████████Examining conflict for fastqc meme: 56%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████▎ Examining conflict for fastqc meme: 60%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ Examining conflict for piranha umi_tools icount rseqc preseq multiqc: 60%|█████████████████████████████████████████████████████████████████████████████████████████████████▊ Examining conflict for piranha umi_tools icount rseqc preseq multiqc: 64%|████████████████████████████████████████████████████████████████████████████████████████████████████████▎ Examining conflict for preseq piranha: 64%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ Examining conflict for preseq piranha: 68%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▉ Examining conflict for piranha umi_tools meme icount rseqc preseq multiqc: 68%|███████████████████████████████████████████████████████████████████████████████████████████████████████████▍ Examining conflict for piranha umi_tools meme icount rseqc preseq multiqc: 72%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for piranha umi_tools meme icount rseqc preseq pureclip: 72%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for piranha umi_tools meme icount rseqc preseq pureclip: 76%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for rseqc preseq piranha: 76%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for rseqc preseq piranha: 80%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for piranha umi_tools meme rseqc preseq: 80%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for piranha umi_tools meme rseqc preseq: 84%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for samtools umi_tools icount rseqc pureclip: 84%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for samtools umi_tools icount rseqc pureclip: 88%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for cutadapt piranha bowtie2 pygments umi_tools meme icount rseqc pymdown-extensions multiqc pureclip python markdown: 88%|████████████████████████████████████████████████Examining conflict for cutadapt piranha bowtie2 pygments umi_tools meme icount rseqc pymdown-extensions multiqc pureclip python markdown: 92%|████████████████████████████████████████████████Examining conflict for cutadapt piranha bowtie2 pygments umi_tools meme icount rseqc pymdown-extensions pureclip multiqc markdown: 92%|███████████████████████████████████████████████████████Examining conflict for cutadapt piranha bowtie2 pygments umi_tools meme icount rseqc pymdown-extensions pureclip multiqc markdown: 96%|███████████████████████████████████████████████████████Examining conflict for pureclip meme: 96%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for pureclip meme: 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for cutadapt bowtie2 samtools umi_tools pygments bedtools meme icount rseqc pymdown-extensions multiqc pureclip python markdown: 100%|██████████████████████████████████████Examining conflict for rseqc pureclip icount: : 26it [04:44, 15.13s/it] failed - /
Solving environment: |
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed -

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package pypy3.9 conflicts for:
bioconda::multiqc=1.9 -> click -> pypy3.9[version='7.3.11.|>=7.3.11|>=7.3.8|>=7.3.9|7.3.9.|7.3.8.']
bioconda::umi_tools=1.1.1 -> future -> pypy3.9[version='>=7.3.11|>=7.3.8|>=7.3.9']
bioconda::bowtie2=2.4.2 -> python[version='>=3.9,<3.10.0a0'] -> pypy3.9[version='7.3.11.
|7.3.9.|7.3.8.']
conda-forge::pymdown-extensions=6.0 -> python -> pypy3.9[version='7.3.11.|7.3.9.|7.3.8.']
conda-forge::markdown=3.1.1 -> python -> pypy3.9[version='7.3.11.
|7.3.9.|7.3.8.|>=7.3.9|>=7.3.8']
conda-forge::pygments=2.5.2 -> python -> pypy3.9[version='7.3.11.|7.3.9.|7.3.8.|>=7.3.9|>=7.3.8']
bioconda::rseqc=4.0.0 -> numpy -> pypy3.9[version='7.3.11.
|>=7.3.11|>=7.3.9|>=7.3.8|7.3.9.|7.3.8.']
bioconda::icount=2.0.0 -> matplotlib -> pypy3.9[version='7.3.11.|>=7.3.11|>=7.3.9|>=7.3.8|7.3.9.|7.3.8.*']

Package libgcc-ng conflicts for:
bioconda::umi_tools=1.1.1 -> libgcc-ng[version='>=7.5.0|>=9.3.0']
bioconda::meme=5.1.1 -> expat[version='>=2.2.9,<2.3.0a0'] -> libgcc-ng[version='>=10.3.0|>=9.3.0|>=4.9|>=12|>=9.4.0|>=11.2.0|>=7.2.0']
bioconda::cutadapt=3.0 -> libgcc-ng[version='>=7.5.0']
bioconda::samtools=1.11 -> ncurses[version='>=6.2,<6.3.0a0'] -> libgcc-ng[version='>=10.3.0|>=12|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
conda-forge::pigz=2.3.4 -> libgcc-ng[version='>=7.3.0']
bioconda::subread=2.0.1 -> libgcc-ng[version='>=10.3.0|>=9.3.0|>=7.3.0']
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0'] -> libgcc-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=12|>=7.2.0|>=4.9|>=11.2.0']
bioconda::samtools=1.11 -> libgcc-ng[version='>=7.5.0']
bioconda::rseqc=4.0.0 -> libgcc-ng[version='>=10.3.0|>=12|>=9.3.0|>=7.5.0']
bioconda::cutadapt=3.0 -> dnaio[version='>=0.4.2'] -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.3.0|>=7.2.0|>=4.9|>=11.2.0']
bioconda::preseq=2.0.3 -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0']
bioconda::fastqc=0.11.9 -> fontconfig -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::preseq=2.0.3 -> gsl[version='>=2.6,<2.7.0a0'] -> libgcc-ng[version='>=10.3.0|>=12|>=9.3.0|>=9.4.0|>=11.2.0|>=7.2.0']
bioconda::paraclu=9 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libgcc-ng[version='>=10.3.0|>=12|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::piranha=1.2.1 -> libgcc-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9']
conda-forge::pymdown-extensions=6.0 -> python -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
conda-forge::python=3.7.3 -> libgcc-ng[version='>=7.3.0']
conda-forge::perl=5.26.2 -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0']
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=11.2.0|>=4.9|>=7.2.0']
bioconda::bedtools=2.29.2 -> bzip2[version='>=1.0.8,<2.0a0'] -> libgcc-ng[version='>=10.3.0|>=11.2.0|>=12|>=7.5.0|>=9.3.0|>=4.9|>=7.2.0']
bioconda::pureclip=1.3.1 -> bedtools -> libgcc-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=12|>=4.9']
conda-forge::pigz=2.3.4 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libgcc-ng[version='>=10.3.0|>=12|>=7.5.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::piranha=1.2.1 -> gsl[version='>=2.7,<2.8.0a0'] -> libgcc-ng[version='>=11.2.0|>=7.2.0|>=12']
conda-forge::pygments=2.5.2 -> python -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::rseqc=4.0.0 -> bx-python -> libgcc-ng[version='7.2.0.*|>=11.2.0|>=4.9|>=7.3.0|>=9.4.0|>=7.2.0']
conda-forge::python=3.7.3 -> bzip2[version='>=1.0.8,<2.0a0'] -> libgcc-ng[version='>=10.3.0|>=4.9|>=7.5.0|>=9.3.0|>=7.2.0|>=9.4.0|>=11.2.0|>=12']
conda-forge::markdown=3.1.1 -> python -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::bowtie2=2.4.2 -> perl -> libgcc-ng[version='>=10.3.0|>=11.2.0|>=4.9|>=7.3.0|>=9.4.0|>=7.2.0|>=12']
bioconda::meme=5.1.1 -> libgcc-ng[version='>=7.3.0|>=7.5.0']
bioconda::bowtie2=2.4.2 -> libgcc-ng[version='>=7.5.0|>=9.3.0']
bioconda::umi_tools=1.1.1 -> matplotlib-base -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=7.3.0|>=11.2.0|>=4.9|>=7.2.0']
bioconda::paraclu=9 -> libgcc-ng[version='>=7.5.0']
bioconda::bedtools=2.29.2 -> libgcc-ng[version='>=7.3.0']
bioconda::subread=2.0.1 -> libzlib[version='>=1.2.11,<1.3.0a0'] -> libgcc-ng[version='>=11.2.0|>=12|>=7.5.0|>=4.9|>=7.2.0']

Package cutadapt conflicts for:
bioconda::icount=2.0.0 -> cutadapt[version='>=1.10']
bioconda|bioconda::cutadapt=3.0
bioconda::cutadapt=3.0

Package readline conflicts for:
bioconda::meme=5.1.1 -> python[version='>=3.8,<3.9.0a0'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.|7.0.']
conda-forge::python=3.7.3 -> readline[version='>=7.0,<8.0a0|>=8.0,<9.0a0']
conda-forge::markdown=3.1.1 -> python -> readline[version='6.2.
|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.0.|7.']
conda-forge::pygments=2.5.2 -> python -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.0.|7.']
bioconda::rseqc=4.0.0 -> python[version='>=3.10,<3.11.0a0'] -> readline[version='6.2.
|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']
bioconda::cutadapt=3.0 -> python[version='>=3.6,<3.7.0a0'] -> readline[version='6.2.
|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|7.|>=8.1.2,<9.0a0|>=8.2,<9.0a0']
bioconda::icount=2.0.0 -> python[version='>=3'] -> readline[version='6.2.
|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']
conda-forge::pymdown-extensions=6.0 -> python -> readline[version='6.2.
|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.0.|7.']
conda-forge::python=3.7.3 -> sqlite[version='>=3.30.1,<4.0a0'] -> readline[version='>=8.1,<9.0a0|>=8.1.2,<9.0a0']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']
bioconda::umi_tools=1.1.1 -> python[version='>=3.8,<3.9.0a0'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']

Package libpng conflicts for:
bioconda::icount=2.0.0 -> matplotlib -> libpng[version='>=1.6.23,<1.7|>=1.6.37,<1.7.0a0|>=1.6.36,<1.7.0a0|>=1.6.35,<1.7.0a0|>=1.6.34,<1.7.0a0|>=1.6.32,<1.7.0a0']
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> libpng[version='>=1.6.35,<1.7.0a0|>=1.6.37,<1.7.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> libpng[version='>=1.6.21,<1.7|>=1.6.22,<1.6.31|>=1.6.32,<1.6.35|>=1.6.34,<1.7.0a0|>=1.6.35,<1.7.0a0|>=1.6.37,<1.7.0a0|>=1.6.28,<1.7|>=1.6.23,<1.7|>=1.6.32,<1.7.0a0|>=1.6.39,<1.7.0a0|>=1.6.38,<1.7.0a0']
bioconda::rseqc=4.0.0 -> r-base -> libpng[version='>=1.6.22,<1.6.31|>=1.6.32,<1.6.35|>=1.6.34,<1.7.0a0|>=1.6.35,<1.7.0a0|>=1.6.37,<1.7.0a0|>=1.6.38,<1.7.0a0|>=1.6.39,<1.7.0a0|>=1.6.28,<1.7|>=1.6.32,<1.7.0a0|>=1.6.27,<1.7']
bioconda::umi_tools=1.1.1 -> matplotlib-base -> libpng[version='>=1.6.35,<1.7.0a0|>=1.6.37,<1.7.0a0']

Package libgfortran4 conflicts for:
bioconda::preseq=2.0.3 -> openblas -> libgfortran4[version='>=7.5.0']
bioconda::rseqc=4.0.0 -> r-base -> libgfortran4[version='>=7.5.0']
bioconda::meme=5.1.1 -> openmpi[version='>=4.0.5,<4.1.0a0'] -> libgfortran4[version='>=7.5.0']
bioconda::umi_tools=1.1.1 -> scipy -> libgfortran4[version='>=7.5.0']
bioconda::piranha=1.2.1 -> openblas -> libgfortran4[version='>=7.5.0']

Package libxml2 conflicts for:
bioconda::meme=5.1.1 -> libxml2[version='>=2.9.10,<2.10.0a0']
bioconda::pureclip=1.3.1 -> meme -> libxml2[version='2.9.|>=2.9.10,<2.10.0a0|>=2.9.12,<2.10.0a0|>=2.9.9,<2.10.0a0|>=2.9.8,<2.10.0a0']
bioconda::meme=5.1.1 -> libxslt[version='>=1.1.33,<2.0a0'] -> libxml2[version='>=2.10.3,<2.11.0a0|>=2.9.14,<2.11.0a0|>=2.9.12,<2.11.0a0|>=2.9.10,<2.11.0a0|>=2.9.9,<2.11.0a0|>=2.9.14,<2.10.0a0|>=2.9.8,<2.10.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> libxml2[version='2.9.
|>=2.9.10,<2.11.0a0|>=2.9.12,<2.11.0a0|>=2.9.9,<2.11.0a0|>=2.9.8,<2.11.0a0|>=2.10.3,<2.11.0a0|>=2.9.14,<2.10.0a0|>=2.9.10,<2.10.0a0|>=2.9.8,<2.10.0a0|>=2.9.7,<2.10.0a0|>=2.9.4,<2.10.0a0']
bioconda::rseqc=4.0.0 -> r-base -> libxml2[version='2.9.*|>=2.10.3,<2.11.0a0|>=2.9.14,<2.11.0a0|>=2.9.12,<2.11.0a0|>=2.9.10,<2.11.0a0|>=2.9.9,<2.11.0a0|>=2.9.8,<2.11.0a0|>=2.9.9,<2.10.0a0|>=2.9.8,<2.10.0a0|>=2.9.7,<2.10.0a0|>=2.9.4,<2.10.0a0']

Package libstdcxx-ng conflicts for:
bioconda::rseqc=4.0.0 -> numpy -> libstdcxx-ng[version='7.2.0.*|>=10.3.0|>=12|>=9.4.0|>=7.3.0|>=4.9|>=11.2.0|>=7.5.0|>=9.3.0|>=7.2.0']
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0'] -> libstdcxx-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=7.2.0|>=12|>=11.2.0']
bioconda::bedtools=2.29.2 -> libstdcxx-ng[version='>=7.3.0']
bioconda::meme=5.1.1 -> expat[version='>=2.2.9,<2.3.0a0'] -> libstdcxx-ng[version='>=10.3.0|>=7.3.0|>=9.3.0|>=7.5.0|>=4.9|>=12|>=9.4.0|>=11.2.0|>=7.2.0']
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> libstdcxx-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=11.2.0|>=4.9|>=7.2.0']
bioconda::pureclip=1.3.1 -> bedtools -> libstdcxx-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9']
conda-forge::pygments=2.5.2 -> python -> libstdcxx-ng[version='>=11.2.0|>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
conda-forge::markdown=3.1.1 -> python -> libstdcxx-ng[version='>=11.2.0|>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
bioconda::fastqc=0.11.9 -> openjdk[version='>=8.0.144'] -> libstdcxx-ng[version='>=10.3.0|>=12|>=9.3.0|>=7.5.0|>=7.3.0']
bioconda::piranha=1.2.1 -> bamtools[version='>=2.5.1,<2.5.2.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.2.0']
conda-forge::python=3.7.3 -> libffi[version='>=3.2.1,<3.3.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.2.0|>=7.5.0']
bioconda::piranha=1.2.1 -> libstdcxx-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0']
bioconda::cutadapt=3.0 -> python[version='>=3.6,<3.7.0a0'] -> libstdcxx-ng[version='>=11.2.0|>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
bioconda::paraclu=9 -> libstdcxx-ng[version='>=7.5.0']
bioconda::umi_tools=1.1.1 -> matplotlib-base -> libstdcxx-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=11.2.0|>=4.9|>=7.2.0']
bioconda::bowtie2=2.4.2 -> libstdcxx-ng[version='>=7.5.0|>=9.3.0']
bioconda::preseq=2.0.3 -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0']
conda-forge::python=3.7.3 -> libstdcxx-ng[version='>=7.3.0']
bioconda::samtools=1.11 -> ncurses[version='>=6.2,<6.3.0a0'] -> libstdcxx-ng[version='>=7.3.0|>=7.5.0']
bioconda::preseq=2.0.3 -> libgcc -> libstdcxx-ng[version='>=7.2.0']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> libstdcxx-ng[version='>=11.2.0|>=7.3.0|>=9.4.0|>=4.9|>=7.2.0']
conda-forge::pymdown-extensions=6.0 -> python -> libstdcxx-ng[version='>=11.2.0|>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']

Package python_abi conflicts for:
conda-forge::pymdown-extensions=6.0 -> python -> python_abi[version='3.6|3.7|3.8.|3.8|3.9',build='_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73|_pypy39_pp73']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> python_abi[version='3.6|3.7|3.8|3.8.|3.9',build='_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73|_pypy39_pp73']
bioconda::rseqc=4.0.0 -> python_abi[version='3.10.|3.6.|3.9.|3.7.|3.8.',build='_cp310|_cp36m|_cp39|_cp37m|_cp38']
bioconda::cutadapt=3.0 -> python_abi[version='3.6.|3.8.|3.7.',build='_cp36m|_cp38|_cp37m']
bioconda::umi_tools=1.1.1 -> python_abi[version='3.6.|3.7.|3.8.',build='_cp36m|_cp37m|_cp38']
bioconda::meme=5.1.1 -> python_abi[version='2.7.|3.6.|3.7.|3.8.',build='_cp27mu|_cp36m|_cp37m|_cp38']
bioconda::meme=5.1.1 -> python[version='>=3.8,<3.9.0a0'] -> python_abi[version='3.6|3.7|3.8|3.8.',build='_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73']
bioconda::piranha=1.2.1 -> python_abi=2.7[build=
_cp27mu]
bioconda::umi_tools=1.1.1 -> future -> python_abi[version='2.7.|3.10.|3.9|3.9.|3.8|3.7|3.6|3.11.|3.8.',build='_cp311|_cp27mu|_pypy36_pp73|_pypy37_pp73|_cp39|_cp310|_pypy39_pp73|_pypy38_pp73|_graalpy223_38_native']
conda-forge::pygments=2.5.2 -> python -> python_abi[version='3.10.|3.6|3.7|3.8.|3.8|3.9|3.9.|3.7.|3.8.|3.11.|3.6.',build='_cp36m|_cp311|_cp310|_cp37m|_cp39|_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73|_pypy39_pp73|_cp38']
conda-forge::markdown=3.1.1 -> python -> python_abi[version='3.10.|3.6|3.7|3.8.|3.8|3.9|3.9.|3.7.|3.8.|3.11.|3.6.',build='_cp36m|_cp311|_cp310|_cp37m|_cp39|_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73|_pypy39_pp73|_cp38']
bioconda::multiqc=1.9 -> click -> python_abi[version='2.7.|3.10.|3.11.|3.8|3.8.|3.9.|3.9|3.7.|3.7|3.6|3.6.|3.8.',build='_graalpy223_38_native|_cp27mu|_cp36m|_pypy36_pp73|_cp37m|_cp310|_cp311|_cp39|_pypy38_pp73|_cp38|_pypy39_pp73|_pypy37_pp73']
bioconda::rseqc=4.0.0 -> bx-python -> python_abi[version='2.7.|3.8|3.9|3.11.|3.7|3.6|3.8.',build='_graalpy223_38_native|_pypy37_pp73|_cp311|_pypy39_pp73|_pypy38_pp73|_cp27mu|_pypy36_pp73']
bioconda::bowtie2=2.4.2 -> python_abi[version='3.6.|3.7.|3.8.|3.9.',build='_cp36m|_cp37m|_cp38|_cp39']
bioconda::pureclip=1.3.1 -> meme -> python_abi[version='2.7.|3.10.|3.6.|3.7.|3.9.|3.8.',build='_cp39|_cp310|_cp36m|_cp37m|_cp27mu|_cp38']
bioconda::cutadapt=3.0 -> dnaio[version='>=0.4.2'] -> python_abi[version='3.10.|3.9.|3.6|3.11.|3.7|3.8|3.8.',build='_graalpy223_38_native|_pypy38_pp73|_pypy37_pp73|_cp311|_pypy36_pp73|_cp310|_cp39']
bioconda::icount=2.0.0 -> cutadapt[version='>=1.10'] -> python_abi[version='2.7.
|3.10.|3.7.|3.8.|3.9.|3.6.|3.9|3.11.|3.8|3.7|3.6|3.8.',build='_graalpy223_38_native|_pypy36_pp73|_pypy37_pp73|_pypy38_pp73|_cp311|_cp36m|_cp310|_cp37m|_cp38|_cp39|_pypy39_pp73|*_cp27mu']

Package libuuid conflicts for:
conda-forge::markdown=3.1.1 -> python -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::rseqc=4.0.0 -> python[version='>=3.10,<3.11.0a0'] -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0']
bioconda::umi_tools=1.1.1 -> python[version='>=3.8,<3.9.0a0'] -> libuuid[version='>=2.32.1,<3.0a0']
bioconda::icount=2.0.0 -> python[version='>=3'] -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> libuuid[version='>=2.32.1,<3.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0']
conda-forge::pygments=2.5.2 -> python -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::meme=5.1.1 -> python[version='>=3.8,<3.9.0a0'] -> libuuid[version='>=2.32.1,<3.0a0']
conda-forge::pymdown-extensions=6.0 -> python -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::cutadapt=3.0 -> python[version='>=3.8,<3.9.0a0'] -> libuuid[version='>=2.32.1,<3.0a0']

Package importlib-metadata conflicts for:
bioconda::multiqc=1.9 -> click -> importlib-metadata[version='>=4.4']
bioconda::icount=2.0.0 -> sphinx[version='>=1.4'] -> importlib-metadata[version='>=4.4|>=4.8']
conda-forge::pymdown-extensions=6.0 -> markdown[version='>=3.0.1'] -> importlib-metadata[version='>=4.4']

Package tzdata conflicts for:
conda-forge::pymdown-extensions=6.0 -> python -> tzdata
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> tzdata
bioconda::icount=2.0.0 -> python[version='>=3'] -> tzdata
conda-forge::markdown=3.1.1 -> python -> tzdata
bioconda::bowtie2=2.4.2 -> python[version='>=3.9,<3.10.0a0'] -> tzdata
bioconda::rseqc=4.0.0 -> python[version='>=3.10,<3.11.0a0'] -> tzdata
conda-forge::pygments=2.5.2 -> python -> tzdata

Package _libgcc_mutex conflicts for:
bioconda::piranha=1.2.1 -> libgcc-ng[version='>=10.3.0'] -> _libgcc_mutex[version='|0.1',build='conda_forge|main|main']
bioconda::samtools=1.11 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='
|0.1|0.1',build='conda_forge|main|main']
bioconda::bedtools=2.29.2 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main']
bioconda::rseqc=4.0.0 -> libgcc-ng[version='>=12'] -> _libgcc_mutex[version='
|0.1',build='conda_forge|main|main']
bioconda::subread=2.0.1 -> libgcc-ng[version='>=10.3.0'] -> _libgcc_mutex[version='|0.1',build='conda_forge|main|main']
bioconda::paraclu=9 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='
|0.1|0.1',build='conda_forge|main|main']
bioconda::cutadapt=3.0 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main']
conda-forge::perl=5.26.2 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='
|0.1|0.1',build='conda_forge|main|main']
bioconda::umi_tools=1.1.1 -> libgcc-ng[version='>=9.3.0'] -> _libgcc_mutex[version='|0.1',build='conda_forge|main|main']
conda-forge::python=3.7.3 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='
|0.1|0.1',build='conda_forge|main|main']
bioconda::meme=5.1.1 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='|0.1|0.1',build='conda_forge|main|main']
bioconda::preseq=2.0.3 -> libgcc-ng[version='>=7.5.0'] -> _libgcc_mutex[version='
|0.1|0.1',build='conda_forge|main|main']
bioconda::bowtie2=2.4.2 -> libgcc-ng[version='>=9.3.0'] -> _libgcc_mutex[version='|0.1',build='conda_forge|main|main']
conda-forge::pigz=2.3.4 -> libgcc-ng[version='>=7.3.0'] -> _libgcc_mutex[version='
|0.1|0.1',build='conda_forge|main|main']

Package bedtools conflicts for:
bioconda|bioconda::bedtools=2.29.2
bioconda::pureclip=1.3.1 -> bedtools
bioconda::bedtools=2.29.2
bioconda::icount=2.0.0 -> pybedtools -> bedtools
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0']

Package certifi conflicts for:
bioconda::umi_tools=1.1.1 -> matplotlib-base -> certifi[version='>=2020.06.20']
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> certifi[version='>=2016.09|>=2016.9.26|>=2017.4.17|>=2020.06.20']
conda-forge::pygments=2.5.2 -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
conda-forge::markdown=3.1.1 -> setuptools[version='>=36'] -> certifi[version='>=2016.09|>=2016.9.26']

Package star conflicts for:
bioconda::star=2.6.1d
bioconda::icount=2.0.0 -> star
bioconda|bioconda::star=2.6.1d

Package gsl conflicts for:
bioconda::preseq=2.0.3 -> gsl[version='1.16.|2.2.|>=2.2.1,<2.3.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0']
bioconda::rseqc=4.0.0 -> r-base -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
bioconda::piranha=1.2.1 -> gsl[version='1.16.|2.2.|>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']

Package setuptools conflicts for:
bioconda::multiqc=1.9 -> setuptools
bioconda::rseqc=4.0.0 -> bx-python -> setuptools
bioconda::umi_tools=1.1.1 -> matplotlib-base -> setuptools[version='<60.0.0']
bioconda::multiqc=1.9 -> markdown -> setuptools[version='>=36']
conda-forge::markdown=3.1.1 -> setuptools[version='>=36']
conda-forge::pymdown-extensions=6.0 -> markdown[version='>=3.0.1'] -> setuptools[version='>=36']
conda-forge::python=3.7.3 -> pip -> setuptools
bioconda::icount=2.0.0 -> matplotlib -> setuptools[version='<60.0.0']
conda-forge::pygments=2.5.2 -> setuptools

Package pygments conflicts for:
conda-forge::pygments=2.5.2
bioconda::icount=2.0.0 -> sphinx[version='>=1.4'] -> pygments[version='>2.0|>=2.0|>=2.12|>=2.13']
conda-forge|conda-forge::pygments=2.5.2

Package bcftools conflicts for:
bioconda::icount=2.0.0 -> pysam -> bcftools[version='1.3|1.3.1.|1.3.1|1.5.|1.6.|1.6|1.7.|1.9.|>=1.4.1|>=1.4.1,<1.5|>=1.4,<1.5|>=1.3,<1.4|>=1.3']
bioconda::rseqc=4.0.0 -> pysam -> bcftools[version='1.3|1.3.1.
|1.3.1|1.5.|1.6.|1.6|1.7.|1.9.|>=1.4.1|>=1.4.1,<1.5|>=1.4,<1.5|>=1.3,<1.4|>=1.3']

Package ncurses conflicts for:
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
bioconda::icount=2.0.0 -> python[version='>=3'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
conda-forge::markdown=3.1.1 -> python -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
bioconda::cutadapt=3.0 -> python[version='>=3.6,<3.7.0a0'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<7.0.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.|>=6.3,<7.0a0|>=6.4,<7.0a0']
bioconda::meme=5.1.1 -> python[version='>=3.8,<3.9.0a0'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<7.0.0a0|>=6.3,<7.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
conda-forge::pygments=2.5.2 -> python -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
conda-forge::python=3.7.3 -> ncurses[version='>=6.1,<7.0.0a0']
bioconda::rseqc=4.0.0 -> python[version='>=3.10,<3.11.0a0'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|6.0.|>=6.0,<7.0a0|>=5.9*|>=5.9.']
bioconda::umi_tools=1.1.1 -> python[version='>=3.8,<3.9.0a0'] -> ncurses[version='5.9.
|5.9|>=6.1,<7.0.0a0|>=6.2,<7.0.0a0|>=6.3,<7.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
conda-forge::pymdown-extensions=6.0 -> python -> ncurses[version='5.9.
|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> ncurses[version='5.9.
|5.9|>=6.1,<7.0.0a0|>=6.2,<7.0.0a0|>=6.3,<7.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
bioconda::samtools=1.11 -> ncurses[version='>=6.2,<6.3.0a0']
conda-forge::python=3.7.3 -> readline[version='>=8.0,<9.0a0'] -> ncurses[version='5.9.
|>=6.1,<7.0a0|>=6.2,<7.0.0a0|>=6.3,<7.0a0|>=6.2,<7.0a0|>=6.4,<7.0a0|>=6.0,<7.0a0|6.0.*']

Package numpy-base conflicts for:
bioconda::multiqc=1.9 -> numpy -> numpy-base[version='1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.4|1.14.4|1.14.4|1.14.4|1.14.4|1.14.4|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.17.2.|1.17.3.|1.17.4.|1.18.1.|1.18.5.|1.19.1|1.19.1|1.19.1|1.19.1|1.19.1|1.19.1|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.5|1.19.5|1.19.5|1.19.5|1.19.5|1.19.5|1.20.1|1.20.1|1.20.1|1.20.1|1.20.1|1.20.1|1.20.2|1.20.2|1.20.2|1.20.2|1.20.2|1.20.2|1.20.3|1.20.3|1.20.3|1.20.3|1.20.3|1.20.3|1.21.2|1.21.2|1.21.2|1.21.2|1.21.2|1.21.2|1.21.2|1.21.2|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.22.3|1.22.3|1.22.3|1.22.3|1.22.3|1.22.3|1.22.3|1.22.3|1.23.1|1.23.1|1.23.1|1.23.1|1.23.1|1.23.1|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.4|1.23.4|1.23.4|1.23.4|1.23.4|1.23.4|1.23.5|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|>=1.9.3,<2.0a0|1.17.0|1.17.0|1.17.0|1.17.0',build='py37h2f8d375_0|py37h2b20989_6|py27hdbf6ddf_6|py36hdbf6ddf_6|py27h2b20989_7|py35h2b20989_7|py27h2b20989_7|py27hdbf6ddf_7|py36h2b20989_8|py37h2b20989_8|py27h2b20989_8|py35hdbf6ddf_8|py35h2b20989_8|py35h7cdd4dd_9|py37h7cdd4dd_9|py36h3dfced4_9|py35h3dfced4_9|py37h81de0dd_9|py27h74e8950_9|py37h74e8950_9|py27h81de0dd_9|py37h81de0dd_10|py36h81de0dd_10|py35h81de0dd_10|py37h2f8d375_10|py36h2f8d375_10|py27h2f8d375_10|py35h2f8d375_10|py27h2f8d375_11|py36h2f8d375_11|py36hde5b4d6_11|py37hde5b4d6_11|py37h2f8d375_12|py27h2f8d375_12|py36h0ea5e3f_1|py27h0ea5e3f_1|py35h0ea5e3f_1|py35h9be14a7_1|py27h2b20989_0|py27hdbf6ddf_0|py35hdbf6ddf_0|py27h2b20989_0|py36hdbf6ddf_0|py27hdbf6ddf_0|py35hdbf6ddf_0|py36h2b20989_1|py37hdbf6ddf_1|py27h2b20989_2|py37h2b20989_2|py27hdbf6ddf_2|py37hdbf6ddf_2|py36hdbf6ddf_2|py36h2b20989_3|py27h2b20989_3|py27hdbf6ddf_3|py37h2b20989_4|py36h2b20989_4|py36hdbf6ddf_4|py35hdbf6ddf_4|py27h81de0dd_4|py36h81de0dd_4|py36h2f8d375_5|py37h2f8d375_5|py36hde5b4d6_5|py36h7cdd4dd_0|py37h7cdd4dd_0|py35h7cdd4dd_0|py36h3dfced4_0|py35h3dfced4_0|py35h74e8950_0|py36h74e8950_0|py37h74e8950_0|py36h81de0dd_0|py27h81de0dd_0|py37h81de0dd_0|py35h2f8d375_0|py37h81de0dd_0|py27h81de0dd_0|py35h81de0dd_0|py36h81de0dd_0|py27h81de0dd_1|py37h81de0dd_1|py27h81de0dd_0|py36h81de0dd_0|py37h81de0dd_0|py36h81de0dd_0|py27h81de0dd_0|py27hde5b4d6_0|py37h2f8d375_0|py36hde5b4d6_0|py37h2f8d375_1|py27h2f8d375_1|py36h2f8d375_1|py36hde5b4d6_1|py36hde5b4d6_0|py27h2f8d375_1|py36hde5b4d6_1|py36hde5b4d6_0|py27hde5b4d6_0|py36hde5b4d6_0|py36hde5b4d6_0|py27hde5b4d6_0|py36hde5b4d6_0|py37h2f8d375_0|py36hde5b4d6_0|py39hfb011de_1|py39h76555f2_1|py37h41b4c56_3|py36hdc34a94_3|py37ha8aedfd_4|py38ha8aedfd_4|py37h73d599e_4|py36h75fe3a5_0|py38h75fe3a5_0|py37h75fe3a5_0|py36h75fe3a5_0|py38hfa32c7d_0|py39h2ae0177_0|py37h4c65ebe_1|py37h21a3de8_1|py38h21a3de8_1|py39h622ebfc_4|py37h34387ca_0|py38h7d8b39e_0|py39h7d8b39e_0|py39he2ba247_0|py37h74d4b33_0|py39h74d4b33_0|py38h74d4b33_0|py38h39b7dee_0|py37h39b7dee_0|py38h79a1101_0|py37h2b8c604_0|py39h2b8c604_0|py310h2b8c604_0|py310h79a1101_0|py39hb8be1f0_1|py38hb8be1f0_1|py37hb8be1f0_1|py310h9585f30_1|py310hf2716ce_2|py37hb8be1f0_2|py310h9585f30_2|py39hf524024_2|py37hf524024_2|py38h1e6e340_3|py39h1e6e340_3|py38ha15fc14_3|py310hcba007f_3|py39ha15fc14_3|py310h9585f30_0|py310hf2716ce_0|py311h0ff3221_1|py39h1e6e340_0|py38h1e6e340_0|py310h375b286_0|py39ha15fc14_0|py310hcba007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bioconda::rseqc=4.0.0 -> numpy -> numpy-base[version='1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.4|1.14.4|1.14.4|1.14.4|1.14.4|1.14.4|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.17.2.
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bioconda::umi_tools=1.1.1 -> numpy[version='>=1.7'] -> numpy-base[version='1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.4|1.14.4|1.14.4|1.14.4|1.14.4|1.14.4|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.17.2.|1.17.3.|1.17.4.|1.18.1.|1.18.5.*|1.19.1|1.19.1|1.19.1|1.19.1|1.19.1|1.19.1|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.5|1.19.5|1.19.5|1.19.5|1.19.5|1.19.5|1.20.1|1.20.1|1.20.1|1.20.1|1.20.1|1.20.1|1.20.2|1.20.2|1.20.2|1.20.2|1.20.2|1.20.2|1.20.3|1.20.3|1.20.3|1.20.3|1.20.3|1.20.3|1.21.2|1.21.2|1.21.2|1.21.2|1.21.2|1.21.2|1.21.2|1.21.2|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.21.5|1.22.3|1.22.3|1.22.3|1.22.3|1.22.3|1.22.3|1.22.3|1.22.3|1.23.1|1.23.1|1.23.1|1.23.1|1.23.1|1.23.1|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.3|1.23.4|1.23.4|1.23.4|1.23.4|1.23.4|1.23.4|1.23.5|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|>=1.9.3,<2.0a0|1.17.0|1.17.0|1.17.0|1.17.0',build='py37h2f8d375_0|py37h2b20989_6|py27hdbf6ddf_6|py36hdbf6ddf_6|py27h2b20989_7|py35h2b20989_7|py27h2b20989_7|py27hdbf6ddf_7|py36h2b20989_8|py37h2b20989_8|py27h2b20989_8|py35hdbf6ddf_8|py35h2b20989_8|py35h7cdd4dd_9|py37h7cdd4dd_9|py36h3dfced4_9|py35h3dfced4_9|py37h81de0dd_9|py27h74e8950_9|py37h74e8950_9|py27h81de0dd_9|py37h81de0dd_10|py36h81de0dd_10|py35h81de0dd_10|py37h2f8d375_10|py36h2f8d375_10|py27h2f8d375_10|py35h2f8d375_10|py27h2f8d375_11|py36h2f8d375_11|py36hde5b4d6_11|py37hde5b4d6_11|py37h2f8d375_12|py27h2f8d375_12|py36h0ea5e3f_1|py27h0ea5e3f_1|py35h0ea5e3f_1|py35h9be14a7_1|py27h2b20989_0|py27hdbf6ddf_0|py35hdbf6ddf_0|py27h2b20989_0|py36hdbf6ddf_0|py27hdbf6ddf_0|py35hdbf6ddf_0|py36h2b20989_1|py37hdbf6ddf_1|py27h2b20989_2|py37h2b20989_2|py27hdbf6ddf_2|py37hdbf6ddf_2|py36hdbf6ddf_2|py36h2b20989_3|py27h2b20989_3|py27hdbf6ddf_3|py37h2b20989_4|py36h2b20989_4|py36hdbf6ddf_4|py35hdbf6ddf_4|py27h81de0dd_4|py36h81de0dd_4|py36h2f8d375_5|py37h2f8d375_5|py36hde5b4d6_5|py36h7cdd4dd_0|py37h7cdd4dd_0|py35h7cdd4dd_0|py36h3dfced4_0|py35h3dfced4_0|py35h74e8950_0|py36h74e8950_0|py37h74e8950_0|py36h81de0dd_0|py27h81de0dd_0|py37h81de0dd_0|py35h2f8d375_0|py37h81de0dd_0|py27h81de0dd_0|py35h81de0dd_0|py36h81de0dd_0|py27h81de0dd_1|py37h81de0dd_1|py27h81de0dd_0|py36h81de0dd_0|py37h81de0dd_0|py36h81de0dd_0|py27h81de0dd_0|py27hde5b4d6_0|py37h2f8d375_0|py36hde5b4d6_0|py37h2f8d375_1|py27h2f8d375_1|py36h2f8d375_1|py36hde5b4d6_1|py36hde5b4d6_0|py27h2f8d375_1|py36hde5b4d6_1|py36hde5b4d6_0|py27hde5b4d6_0|py36hde5b4d6_0|py36hde5b4d6_0|py27hde5b4d6_0|py36hde5b4d6_0|py37h2f8d375_0|py36hde5b4d6_0|py39hfb011de_1|py39h76555f2_1|py37h41b4c56_3|py36hdc34a94_3|py37ha8aedfd_4|py38ha8aedfd_4|py37h73d599e_4|py36h75fe3a5_0|py38h75fe3a5_0|py37h75fe3a5_0|py36h75fe3a5_0|py38hfa32c7d_0|py39h2ae0177_0|py37h4c65ebe_1|py37h21a3de8_1|py38h21a3de8_1|py39h622ebfc_4|py37h34387ca_0|py38h7d8b39e_0|py39h7d8b39e_0|py39he2ba247_0|py37h74d4b33_0|py39h74d4b33_0|py38h74d4b33_0|py38h39b7dee_0|py37h39b7dee_0|py38h79a1101_0|py37h2b8c604_0|py39h2b8c604_0|py310h2b8c604_0|py310h79a1101_0|py39hb8be1f0_1|py38hb8be1f0_1|py37hb8be1f0_1|py310h9585f30_1|py310hf2716ce_2|py37hb8be1f0_2|py310h9585f30_2|py39hf524024_2|py37hf524024_2|py38h1e6e340_3|py39h1e6e340_3|py38ha15fc14_3|py310hcba007f_3|py39ha15fc14_3|py310h9585f30_0|py310hf2716ce_0|py311h0ff3221_1|py39h1e6e340_0|py38h1e6e340_0|py310h375b286_0|py39ha15fc14_0|py310hcba00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Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by inspecting clipseq/environment.yml and reproducing the documented conda commands. Use the dependency-conflict output to identify the incompatible packages or version constraints; done means both the base environment and the clipseq environment create successfully.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
devops
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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