Create new test data
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 26
- Forks
- 43
- PR merge metrics
- No merged PRs in 30d
Description
Create new test data from chromosome 21 - take the bam file, filter chromosome 21, match the read names and match to the original fastq. Needs to upload to nfcore test-datasets.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by identifying the BAM file, original FASTQ, and nf-core test-datasets location used by the project. Filter the BAM to chromosome 21, match read names against the original FASTQ, and verify that the resulting data is suitable before uploading it to nf-core test-datasets.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, testing-qa
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100