iCount summaries error
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bug
- Dominant language
- Nextflow
- Stars
- 26
- Forks
- 43
- PR merge metrics
- No merged PRs in 30d
Description
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Description of the bug
The premaped cDNA crosslink files are randomly paired with other iCount summary files, producing erroneous "premapadjusted" icount summary files.
Steps to reproduce
Steps to reproduce the behaviour:
- Command line:
- See error:
Expected behaviour
Log files
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- The command used to run the pipeline
- The
.nextflow.logfile
System
- Hardware:
- Executor:
- OS:
- Version
Nextflow Installation
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Additional context
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No command, logs, system details, files, or tests are provided. Start by obtaining a reproducible pipeline run and tracing how premaped cDNA crosslink files are paired with iCount summary files. Done means the pairing is deterministic and the resulting "premapadjusted" summaries use the matching iCount files.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100