Remove the separate filer_gtf module that filters for Ensembl_canonical flag
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enhancement
- Dominant language
- Nextflow
- Stars
- 26
- Forks
- 43
- PR merge metrics
- No merged PRs in 30d
Description
Is your feature request related to a problem? Please describe
A change in longest_transcript module renders FILTER_GTF module obsolete.
Describe the solution you'd like
Remove the FILTER_GTF module from the pipeline and have everything handled by FIND_LONGEST_TRANSCRIPT module.
Describe alternatives you've considered
Additional context
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Locate the FILTER_GTF and FIND_LONGEST_TRANSCRIPT modules and trace their references in the pipeline. Remove the obsolete FILTER_GTF module, ensure the pipeline uses FIND_LONGEST_TRANSCRIPT for the filtering work, and verify that no references to FILTER_GTF remain.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100