Switch local/module GTF2BED to nf-core/module BEDOPS_GTF2BED
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enhancement
- Dominant language
- Nextflow
- Stars
- 246
- Forks
- 184
- PR merge metrics
- No merged PRs in 30d
Description
Potentially refactor to use the nf-core module instead of the local GTF2BED module.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the local GTF2BED module and every workflow reference to it, then compare them with the nf-core BEDOPS_GTF2BED module at the linked page. Done means the pipeline uses the nf-core module instead of the local one and its existing workflow checks still pass.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100