Enable the use of CSI bam index
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 246
- Forks
- 184
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
See https://github.com/nf-core/atacseq/issues/327 and https://github.com/nf-core/atacseq/pull/328
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Read the linked nf-core/atacseq issue #327 and pull request #328 first to understand the intended CSI BAM index support. Then locate the corresponding chipseq workflow inputs and validation steps; done means the pipeline accepts CSI-indexed BAM files and its existing checks complete successfully.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100