Spike ins normalization
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 246
- Forks
- 184
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
Hi nf-core team,
first of all thanks for the amazing work!
I was wondering if the pipeline already takes in consideration the spike ins and in that case how to use it.
If this function in not implemented yet, it is possible to implement it?
Thanks in advance
Emanuel
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. Start by reviewing the nf-core/chipseq pipeline's current normalization options and documentation to determine whether spike-in normalization is supported. Clarify whether the expected outcome is usage guidance or new functionality; done should mean either documented usage or an agreed implementation scope.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100