Single end Illumina processing?
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enhancement
- Dominant language
- Nextflow
- Stars
- 93
- Forks
- 74
- Avg merge
- 1d 22h
- Merged PRs (30d)
- 2
Description
Is there a way to process single end reads with bacass? I am attempting to modify config files, and it would be amazing if you already had a solution in hand.
Best,
Emily
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
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Research direction
The issue asks whether bacass can process single-end Illumina reads and mentions modifying configuration files, but names no specific file, test, or entry point. Start by locating the Illumina input configuration and workflow entry point; done means single-end reads are accepted and the pipeline completes successfully with documented configuration.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100