nf-core / nf-core/bacass

Add dbCAN

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enhancement
Dominant language
Nextflow
Stars
93
Forks
74
Avg merge
1d 22h
Merged PRs (30d)
2

Description

Description of feature

Add rundbcan module for CAZyme annotation

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

The issue names a rundbcan module for CAZyme annotation but no files, entry points, tests, or expected inputs and outputs. Start by locating existing annotation modules and their tests, then establish the dbCAN invocation and integration point; done means the module is integrated and its expected annotation result is covered by tests.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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