nf-core / nf-core/bacass

Add gfastats module (structural assembly statistics)

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#209 0 comments 0 reactions 1 assignee View on GitHub

@PauPascualMas is already working on this.

Since Mar 11, 2026.

enhancement
Dominant language
Nextflow
Stars
93
Forks
74
Avg merge
1d 22h
Merged PRs (30d)
2

Description

Description of feature

Description

Add a module for gfastats, a tool that parses assembly FASTA/GFA files and produces detailed metrics, including circularity status, which is helpful in bacterial genome projects.

Goal

  • Build a module that runs gfastats on FASTA files
  • Report standard metrics (N50, circularity, etc.) and check whether output stats can be added to MultiQC
  • Include documentation

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