nf-core / nf-core/bacass

MultiQC Version 1.21 Parsing Issue

Open
#142 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

enhancement
Dominant language
Nextflow
Stars
93
Forks
74
Avg merge
1d 22h
Merged PRs (30d)
2

Description

Description of feature

I attempted to create a patch, but MultiQC version 1.21 does not properly parse the "file setup". It seems to require a deeper refactor as it worked correctly with version 1.19.

It might be worth discussing this issue with the MultiQC developers to identify the root cause and work towards a fix.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by comparing how MultiQC versions 1.19 and 1.21 parse the reported "file setup" in this pipeline. Discuss the root cause with the MultiQC developers; done means the pipeline parses correctly with the affected MultiQC version.

Written by the indexing model from the issue text.

Assessment

Domain
tooling
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.