nf-core / nf-core/atacseq

ataqv

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Nextflow
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Description

Can you explain how does ataqv compute the TSS Enrichmentscore ?
It seems to be different than what ENCODE recommends

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating where ataqv computes TSS Enrichment; the issue names no repository file or test to begin from. Compare that calculation with the ENCODE recommendation and document the source of any difference. Done means the computation and discrepancy are explained clearly.

Written by the indexing model from the issue text.

Assessment

Domain
documentation
Issue type
Documentation
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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