Please change default MACS2 peak calling to narrow peak
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enhancement
- Dominant language
- Nextflow
- Stars
- 229
- Forks
- 141
- Avg merge
- 13h 41m
- Merged PRs (30d)
- 1
Description
Description of feature
It would be very helpful if the default mode is changed to narrow peak, as most ATAC-seq analysis is centered around finding TFs and regulatory elements.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue only identifies the default MACS2 peak-calling mode; start by locating the workflow configuration or process that sets this default. Confirm how the current mode is selected and verify that a fresh run uses narrow-peak calling by default.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100