nextflow-io / nextflow-io/training
Side Quest idea: handling conditional scenarios
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side quests
- Dominant language
- Nextflow
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- 271
- Forks
- 329
- Avg merge
- 1d 1h
- Merged PRs (30d)
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Description
Would be neat to have an optional hello module demonstrate how to make certain steps conditional (for GATK pipeline, the indexing could be conditional depending on existence of the file, or boolean?) and also switching between tools (for GATK pipeline, could switch between GATK and something else)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Review the training repository's optional hello material and GATK pipeline example as the starting points. Done would be an optional demonstration of conditional indexing based on file existence or a boolean, plus switching between GATK and another tool, with the intended behavior explained for learners.
Written by the indexing model from the issue text.
Assessment
- Domain
- documentation
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100