nextflow-io / nextflow-io/nextflow

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Description

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.

Repository Problems

Renovate tried to run on this repository, but found these problems.

  • ⚠️ WARN: Package lookup failures

Awaiting Schedule

The following updates are awaiting their schedule. To get an update now, click on a checkbox below.

  • chore: update anthropics/claude-code-action action to v1.0.223
  • chore: update dependency io.seqera:npr-api to v0.26.3
  • chore: update dependency io.seqera:npr-client to v0.26.3
  • chore: update dependency org.slf4j:jul-to-slf4j to v2.0.19
  • chore: update dependency org.slf4j:log4j-over-slf4j to v2.0.19
  • chore: update dependency org.slf4j:slf4j-api to v2.0.19
  • chore: update dependency org.spockframework:spock-core to v2.4-groovy-5.0
  • chore: update dependency org.spockframework:spock-junit4 to v2.4-groovy-5.0
  • chore: update dependency postcss-nesting to v14.0.1
  • chore: update dependency tailwindcss to v4.3.3
  • chore: update dependency yaml to v2.9.1
  • chore: update node.js to v26.8.2
  • chore: update plugin io.nextflow.nextflow-plugin to v1.0.0-beta.15
  • chore: update actions/checkout action to v6.1.0
  • chore: update actions/setup-java action to v5.7.0
  • chore: update actions/stale action to v10.4.0
  • chore: update dependency @docusaurus/core to v3.10.2
  • chore: update dependency @docusaurus/module-type-aliases to v3.10.2
  • chore: update dependency @docusaurus/preset-classic to v3.10.2
  • chore: update dependency @docusaurus/theme-mermaid to v3.10.2
  • chore: update dependency @docusaurus/types to v3.10.2
  • chore: update dependency @earendil-works/pi-coding-agent to v0.85.1
  • chore: update dependency ch.qos.logback:logback-classic to v1.6.3
  • chore: update dependency ch.qos.logback:logback-core to v1.6.3
  • chore: update dependency com.azure:azure-storage-blob to v12.35.1
  • chore: update dependency com.beust:jcommander to v1.82
  • chore: update dependency com.fasterxml.jackson.core:jackson-annotations to v2.22
  • chore: update dependency com.fasterxml.jackson.core:jackson-core to v2.22.2
  • chore: update dependency com.fasterxml.jackson.core:jackson-databind to v2.22.2
  • chore: update dependency com.fasterxml.jackson.dataformat:jackson-dataformat-yaml to v2.22.2
  • chore: update dependency com.fasterxml.woodstox:woodstox-core to v7.2.2
  • chore: update dependency com.github.javaparser:javaparser-core to v3.28.2
  • chore: update dependency com.google.auth:google-auth-library-oauth2-http to v1.52.0
  • chore: update dependency com.google.cloud:google-cloud-batch to v0.97.0
  • chore: update dependency com.google.cloud:google-cloud-logging to v3.38.0
  • chore: update dependency com.google.cloud:google-cloud-nio to v0.137.0
  • chore: update dependency com.google.cloud:google-cloud-storage to v2.73.0
  • chore: update dependency com.google.code.gson:gson to v2.14.0
  • chore: update dependency com.google.guava:guava to v33.7.1-jre
  • chore: update dependency com.google.jimfs:jimfs to v1.3.2
  • chore: update dependency commons-codec:commons-codec to v1.22.1
  • chore: update dependency commons-io:commons-io to v2.22.0
  • chore: update dependency daisyui to v5.7.37
  • chore: update dependency dev.langchain4j:langchain4j to v1.20.0
  • chore: update dependency dev.langchain4j:langchain4j-open-ai to v1.20.0
  • chore: update dependency fs-extra to v11.4.0
  • chore: update dependency gradle to v9.7.1
  • chore: update dependency io.grpc:grpc-api to v1.84.0
  • chore: update dependency io.grpc:grpc-bom to v1.84.0
  • chore: update dependency io.grpc:grpc-netty-shaded to v1.84.0
  • chore: update dependency io.grpc:grpc-stub to v1.84.0
  • chore: update dependency io.netty:netty-bom to v4.2.18.final
  • chore: update dependency io.seqera:lib-cloudinfo to v1.2.2
  • chore: update dependency io.seqera:sched-client to v0.86.3
  • chore: update dependency io.seqera:tower-api to v1.214.0
  • chore: update dependency io.seqera:wave-api to v1.37.0
  • chore: update dependency io.seqera:wave-utils to v1.37.0
  • chore: update dependency jline:jline to v2.14.6
  • chore: update dependency net.bytebuddy:byte-buddy to v1.18.13
  • chore: update dependency org.apache.commons:commons-compress to v1.28.0
  • chore: update dependency org.apache.commons:commons-lang3 to v3.20.0
  • chore: update dependency org.apache.ivy:ivy to v2.6.0
  • chore: update dependency org.bouncycastle:bcpkix-jdk18on to v1.86
  • chore: update dependency org.eclipse.jgit:org.eclipse.jgit to v7.8.0.202609011348-r
  • chore: update dependency org.junit.platform:junit-platform-launcher to v1.14.4
  • chore: update dependency org.objenesis:objenesis to v3.6
  • chore: update dependency org.pf4j:pf4j to v3.15.1
  • chore: update dependency org.yaml:snakeyaml to v2.7
  • chore: update dependency postcss-import to v16.2.0
  • chore: update dependency software.amazon.awssdk:apache-client to v2.54.17
  • chore: update dependency software.amazon.awssdk:aws-crt-client to v2.54.17
  • chore: update dependency software.amazon.awssdk:batch to v2.54.17
  • chore: update dependency software.amazon.awssdk:cloudwatchlogs to v2.54.17
  • chore: update dependency software.amazon.awssdk:codecommit to v2.54.17
  • chore: update dependency software.amazon.awssdk:ec2 to v2.54.17
  • chore: update dependency software.amazon.awssdk:ecs to v2.54.17
  • chore: update dependency software.amazon.awssdk:iam to v2.54.17
  • chore: update dependency software.amazon.awssdk:s3 to v2.54.17
  • chore: update dependency software.amazon.awssdk:s3-transfer-manager to v2.54.17
  • chore: update dependency software.amazon.awssdk:ses to v2.54.17
  • chore: update dependency software.amazon.awssdk:sso to v2.54.17
  • chore: update dependency software.amazon.awssdk:ssooidc to v2.54.17
  • chore: update dependency software.amazon.awssdk:sts to v2.54.17
  • chore: update docker/login-action action to v4.6.0
  • chore: update docker/setup-qemu-action action to v4.3.0
  • chore: update reviewdog/action-suggester action to v1.25.0
  • chore: update actions/checkout action to v7
  • chore: update actions/setup-java action to v6
  • chore: update actions/setup-node action to v7
  • chore: update actions/stale action to v11
  • chore: update dependency com.networknt:json-schema-validator to v3
  • chore: update dependency io.seqera:lib-cloudinfo to v2
  • chore: update dependency node to v24
  • chore: update dependency org.apache.groovy:groovy to v5
  • chore: update dependency org.apache.groovy:groovy-ant to v5
  • chore: update dependency org.apache.groovy:groovy-console to v5
  • chore: update dependency org.apache.groovy:groovy-groovydoc to v5
  • chore: update dependency org.apache.groovy:groovy-json to v5
  • chore: update dependency org.apache.groovy:groovy-nio to v5
  • chore: update dependency org.apache.groovy:groovy-swing to v5
  • chore: update dependency org.apache.groovy:groovy-templates to v5
  • chore: update dependency org.apache.groovy:groovy-test to v5
  • chore: update dependency org.apache.groovy:groovy-xml to v5
  • chore: update dependency org.apache.groovy:groovy-yaml to v5
  • chore: update dependency org.junit.platform:junit-platform-launcher to v6
  • chore: update dependency postcss-import to v17
  • chore: update dependency react to v19
  • chore: update dependency react-dom to v19
  • πŸ” Create all awaiting schedule PRs at once πŸ”

PR Edited (Blocked)

The following updates have been manually edited so Renovate will no longer make changes. To discard all commits and start over, click on a checkbox below.

Pending Status Checks

The following updates await pending status checks. To force their creation now, click on a checkbox below.

  • chore: update golang docker tag to v1.27
  • chore: update module google.golang.org/grpc to v1.84.0
  • chore: update amazoncorretto docker tag to v27
  • chore: update dependency dotenv to v18

[!WARNING]
Renovate failed to look up the following dependencies: Failed to look up docker package pditommaso/dkrbase: no-result.

Files affected: tests-v1/Dockerfile, tests/Dockerfile

Open

The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.

PR Closed (Blocked)

The following updates are blocked by an existing closed PR. To recreate the PR, click on a checkbox below.

Detected Dependencies

devcontainer (1)
.devcontainer/devcontainer.json (1)
  • ghcr.io/devcontainers/features/java 1
dockerfile (8)
docker/Dockerfile (1)
  • amazoncorretto 25-al2023 β†’ [Updates: 27-al2023]
docker/flux/.devcontainer/Dockerfile
plugins/nf-agent-pi/Dockerfile (2)
  • golang 1.25-bookworm@sha256:3b4a11519ad929d1e1d261a12cff056f0c85b735253d7d861346b9c6f8b36437 β†’ [Updates: 1.27-bookworm]
  • node 24.4.1-bookworm-slim@sha256:36ae19f59c91f3303c7a648f07493fe14c4bd91320ac8d898416327bacf1bbfa β†’ [Updates: 24.21.0-bookworm-slim, 26.9.0-bookworm-slim]
test-e2e/Dockerfile (1)
  • amazoncorretto 25-al2023 β†’ [Updates: 27-al2023]
tests-v1/Dockerfile (1)
  • pditommaso/dkrbase 1.2
tests/Dockerfile (1)
  • pditommaso/dkrbase 1.2
validation/test-aws-unstage-fail-container/Dockerfile
validation/wave-tests/example2/modules/foo/Dockerfile
github-actions (6)
.github/workflows/build.yml (14)
  • actions/checkout v6.0.3@df4cb1c069e1874edd31b4311f1884172cec0e10 β†’ [Updates: v6.1.0, v7.0.1]
  • actions/setup-java v5.2.0@be666c2fcd27ec809703dec50e508c2fdc7f6654 β†’ [Updates: v5.7.0, v6.0.1]
  • actions/upload-artifact v7.0.1@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
  • actions/checkout v6.0.3@df4cb1c069e1874edd31b4311f1884172cec0e10 β†’ [Updates: v6.1.0, v7.0.1]
  • actions/setup-java v5.2.0@be666c2fcd27ec809703dec50e508c2fdc7f6654 β†’ [Updates: v5.7.0, v6.0.1]
  • actions/upload-artifact v7.0.1@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a
  • actions/checkout v6.0.3@df4cb1c069e1874edd31b4311f1884172cec0e10 β†’ [Updates: v6.1.0, v7.0.1]
  • actions/setup-java v5.2.0@be666c2fcd27ec809703dec50e508c2fdc7f6654 β†’ [Updates: v5.7.0, v6.0.1]
  • docker/login-action v4.1.0@4907a6ddec9925e35a0a9e82d7399ccc52663121 β†’ [Updates: v4.6.0]
  • actions/checkout v6.0.3@df4cb1c069e1874edd31b4311f1884172cec0e10 β†’ [Updates: v6.1.0, v7.0.1]
  • actions/setup-java v5.2.0@be666c2fcd27ec809703dec50e508c2fdc7f6654 β†’ [Updates: v5.7.0, v6.0.1]
  • docker/login-action v4.1.0@4907a6ddec9925e35a0a9e82d7399ccc52663121 β†’ [Updates: v4.6.0]
  • docker/login-action v4.1.0@4907a6ddec9925e35a0a9e82d7399ccc52663121 β†’ [Updates: v4.6.0]
  • docker/setup-qemu-action v4.2.0@96fe6ef7f33517b61c61be40b68a1882f3264fb8 β†’ [Updates: v4.3.0]
.github/workflows/cffconvert.yml (2)
  • actions/checkout v6.0.3@df4cb1c069e1874edd31b4311f1884172cec0e10 β†’ [Updates: v6.1.0, v7.0.1]
  • citation-file-format/cffconvert-github-action 2.0.0@4cf11baa70a673bfdf9dad0acc7ee33b3f4b6084
.github/workflows/claude.yml (2)
  • actions/checkout v6.0.3@df4cb1c069e1874edd31b4311f1884172cec0e10 β†’ [Updates: v6.1.0, v7.0.1]
  • anthropics/claude-code-action v1.0.219@5ccc3a35a6367cdb8e6fbd0728287467540ecfe2 β†’ [Updates: v1.0.223]
.github/workflows/codespell.yml (3)
  • actions/checkout v7.0.1@3d3c42e5aac5ba805825da76410c181273ba90b1
  • codespell-project/actions-codespell v2.4.3@e3258cca84ce02b0bb36a3d41f2c18f719a0cc1a
  • reviewdog/action-suggester v1.24.3@2558ba17e65a9039e73764a73009fc05fef28a46 β†’ [Updates: v1.25.0]
.github/workflows/docs.yml (3)
  • actions/checkout v6.0.3@df4cb1c069e1874edd31b4311f1884172cec0e10 β†’ [Updates: v6.1.0, v7.0.1]
  • actions/setup-node v4.4.0@49933ea5288caeca8642d1e84afbd3f7d6820020 β†’ [Updates: v7.0.0]
  • node 22.23.2 β†’ [Updates: 24.21.0]
.github/workflows/stale.yml (1)
  • actions/stale v10.2.0@b5d41d4e1d5dceea10e7104786b73624c18a190f β†’ [Updates: v10.4.0, v11.0.0]
gomod (1)
plugins/nf-agent-pi/agent-rpc/go.mod (2)
  • go 1.25.0
  • google.golang.org/grpc v1.83.2 β†’ [Updates: v1.84.0]
gradle (24)
build.gradle (4)
  • org.junit.platform:junit-platform-launcher 1.10.5 β†’ [Updates: 1.14.4, 6.1.3]
  • org.fusesource.jansi:jansi 2.4.3
  • org.apache.groovy:groovy-groovydoc 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-ant 4.0.33 β†’ [Updates: 5.1.2]
gradle.properties
modules/nextflow/build.gradle (40)
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-xml 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-json 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-templates 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-yaml 4.0.33 β†’ [Updates: 5.1.2]
  • org.slf4j:jcl-over-slf4j 2.0.17 β†’ [Updates: 2.0.19]
  • org.slf4j:jul-to-slf4j 2.0.17 β†’ [Updates: 2.0.19]
  • org.slf4j:log4j-over-slf4j 2.0.17 β†’ [Updates: 2.0.19]
  • ch.qos.logback:logback-classic 1.5.38 β†’ [Updates: 1.6.3]
  • ch.qos.logback:logback-core 1.5.38 β†’ [Updates: 1.6.3]
  • org.codehaus.gpars:gpars 1.2.1 β†’ [Updates: 1.2.2]
  • ch.artecat.grengine:grengine 3.0.2
  • org.apache.commons:commons-lang3 3.18.0 β†’ [Updates: 3.20.0]
  • commons-codec:commons-codec 1.15 β†’ [Updates: 1.22.1]
  • commons-io:commons-io 2.15.1 β†’ [Updates: 2.22.0]
  • com.esotericsoftware.kryo:kryo 2.24.0
  • org.iq80.leveldb:leveldb 0.12
  • org.eclipse.jgit:org.eclipse.jgit 7.1.1.202505221757-r β†’ [Updates: 7.8.0.202609011348-r]
  • javax.activation:activation 1.1.1
  • javax.mail:mail 1.4.7
  • org.yaml:snakeyaml 2.2 β†’ [Updates: 2.7]
  • org.jsoup:jsoup 1.23.2
  • jline:jline 2.9 β†’ [Updates: 2.14.6]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • dev.failsafe:failsafe 3.3.2
  • io.seqera:lib-trace 0.1.0
  • com.fasterxml.woodstox:woodstox-core 7.1.1 β†’ [Updates: 7.2.2]
  • org.apache.commons:commons-compress 1.27.1 β†’ [Updates: 1.28.0]
  • io.seqera:npr-api 0.26.3-SNAPSHOT β†’ [Updates: 0.26.3]
  • io.seqera:npr-client 0.26.3-SNAPSHOT β†’ [Updates: 0.26.3]
  • com.networknt:json-schema-validator 1.5.9 β†’ [Updates: 3.0.7]
  • org.subethamail:subethasmtp 3.1.7
  • org.wiremock:wiremock-standalone 3.13.2
  • org.apache.groovy:groovy-test 4.0.33 β†’ [Updates: 5.1.2]
  • org.objenesis:objenesis 3.4 β†’ [Updates: 3.6]
  • net.bytebuddy:byte-buddy 1.14.17 β†’ [Updates: 1.18.13]
  • org.spockframework:spock-core 2.4-groovy-4.0 β†’ [Updates: 2.4-groovy-5.0]
  • org.spockframework:spock-junit4 2.4-groovy-4.0 β†’ [Updates: 2.4-groovy-5.0]
  • com.google.jimfs:jimfs 1.2 β†’ [Updates: 1.3.2]
modules/nf-cli-v1/build.gradle (3)
  • com.gradleup.shadow 9.6.1
  • com.beust:jcommander 1.35 β†’ [Updates: 1.82]
  • org.subethamail:subethasmtp 3.1.7
modules/nf-commons/build.gradle (16)
  • ch.qos.logback:logback-classic 1.5.38 β†’ [Updates: 1.6.3]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.commons:commons-lang3 3.18.0 β†’ [Updates: 3.20.0]
  • com.google.guava:guava 33.0.0-jre β†’ [Updates: 33.7.1-jre]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • org.pf4j:pf4j-update 2.3.0
  • dev.failsafe:failsafe 3.3.2
  • io.seqera:lib-httpx 2.7.0
  • io.seqera:lib-util-net 0.2.0
  • io.seqera:lib-retry 2.1.0
  • com.google.code.gson:gson 2.13.1 β†’ [Updates: 2.14.0]
  • io.seqera:npr-api 0.26.3-SNAPSHOT β†’ [Updates: 0.26.3]
  • com.fasterxml.jackson.core:jackson-databind 2.21.5 β†’ [Updates: 2.22.2]
  • org.apache.groovy:groovy-json 4.0.33 β†’ [Updates: 5.1.2]
  • org.wiremock:wiremock-standalone 3.13.2
modules/nf-httpfs/build.gradle (6)
  • ch.qos.logback:logback-classic 1.5.38 β†’ [Updates: 1.6.3]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
  • com.esotericsoftware.kryo:kryo 2.24.0
  • org.apache.groovy:groovy-json 4.0.33 β†’ [Updates: 5.1.2]
  • org.wiremock:wiremock-standalone 3.13.2
modules/nf-lang/build.gradle (4)
  • me.sunlan:antlr4 4.13.2.16
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • com.google.jimfs:jimfs 1.2 β†’ [Updates: 1.3.2]
modules/nf-lineage/build.gradle (2)
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
packing.gradle (1)
  • org.apache.ivy:ivy 2.5.2 β†’ [Updates: 2.6.0]
plugins/build.gradle
plugins/gradle.properties (1)
  • io.nextflow.nextflow-plugin 1.0.0-beta.14 β†’ [Updates: 1.0.0-beta.15]
plugins/nf-agent-pi/build.gradle (9)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • io.grpc:grpc-api 1.75.0 β†’ [Updates: 1.84.0]
  • io.grpc:grpc-stub 1.75.0 β†’ [Updates: 1.84.0]
  • io.grpc:grpc-netty-shaded 1.75.0 β†’ [Updates: 1.84.0]
  • org.bouncycastle:bcprov-jdk18on 1.84 β†’ [Updates: 1.85]
  • org.bouncycastle:bcpkix-jdk18on 1.84 β†’ [Updates: 1.86]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-json 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-agent/build.gradle (9)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • dev.langchain4j:langchain4j-open-ai 1.17.0 β†’ [Updates: 1.20.0]
  • dev.langchain4j:langchain4j 1.17.0 β†’ [Updates: 1.20.0]
  • dev.langchain4j:langchain4j-skills 1.17.0-beta27
  • com.fasterxml.jackson.core:jackson-databind 2.21.5 β†’ [Updates: 2.22.2]
  • com.fasterxml.jackson.core:jackson-core 2.21.5 β†’ [Updates: 2.22.2]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-amazon/build.gradle (19)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • javax.xml.bind:jaxb-api 2.4.0-b180830.0359
  • software.amazon.awssdk:s3 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:ec2 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:batch 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:iam 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:ecs 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:cloudwatchlogs 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:codecommit 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:sts 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:ses 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:sso 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:ssooidc 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:s3-transfer-manager 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:apache-client 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:aws-crt-client 2.53.1 β†’ [Updates: 2.54.17]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-azure/build.gradle (11)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • com.azure:azure-storage-blob 12.33.4 β†’ [Updates: 12.35.1]
  • com.azure:azure-compute-batch 1.0.0-beta.6
  • com.azure:azure-identity 1.18.6
  • com.fasterxml.jackson.core:jackson-databind 2.18.9 β†’ [Updates: 2.22.2]
  • com.fasterxml.jackson.core:jackson-core 2.18.9 β†’ [Updates: 2.22.2]
  • com.fasterxml.jackson.core:jackson-annotations 2.18.9 β†’ [Updates: 2.22]
  • io.netty:netty-bom 4.1.137.Final β†’ [Updates: 4.2.18.Final]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-cloudcache/build.gradle (4)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-codecommit/build.gradle (8)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • javax.xml.bind:jaxb-api 2.4.0-b180830.0359
  • software.amazon.awssdk:codecommit 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:sso 2.53.1 β†’ [Updates: 2.54.17]
  • software.amazon.awssdk:ssooidc 2.53.1 β†’ [Updates: 2.54.17]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-console/build.gradle (7)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • org.apache.groovy:groovy-console 4.0.21-patch.2 β†’ [Updates: 4.0.33, 5.1.2]
  • org.apache.groovy:groovy-swing 4.0.33 β†’ [Updates: 5.1.2]
  • com.github.javaparser:javaparser-core 3.25.8 β†’ [Updates: 3.28.2]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-google/build.gradle (15)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • com.google.auth:google-auth-library-oauth2-http 1.39.1 β†’ [Updates: 1.52.0]
  • com.google.cloud:google-cloud-batch 0.75.0 β†’ [Updates: 0.97.0]
  • com.google.cloud:google-cloud-logging 3.23.5 β†’ [Updates: 3.38.0]
  • com.google.cloud:google-cloud-nio 0.128.5 β†’ [Updates: 0.137.0]
  • com.google.cloud:google-cloud-storage 2.58.0 β†’ [Updates: 2.73.0]
  • io.seqera:lib-cloudinfo 1.0.0 β†’ [Updates: 1.2.2, 2.0.0]
  • io.seqera:lib-httpx 2.7.0
  • com.fasterxml.jackson.core:jackson-databind 2.18.9 β†’ [Updates: 2.22.2]
  • com.fasterxml.jackson.core:jackson-core 2.18.9 β†’ [Updates: 2.22.2]
  • com.fasterxml.jackson.core:jackson-annotations 2.18.9 β†’ [Updates: 2.22]
  • io.grpc:grpc-bom 1.75.0 β†’ [Updates: 1.84.0]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-k8s/build.gradle (6)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • org.bouncycastle:bcprov-jdk18on 1.84 β†’ [Updates: 1.85]
  • org.bouncycastle:bcpkix-jdk18on 1.84 β†’ [Updates: 1.86]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-seqera/build.gradle (7)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • io.seqera:sched-client 0.79.3 β†’ [Updates: 0.86.3]
  • io.seqera:lib-httpx 2.7.0
  • com.fasterxml.jackson.core:jackson-databind 2.21.5 β†’ [Updates: 2.22.2]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
plugins/nf-tower/build.gradle (12)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • io.seqera:lib-httpx 2.7.0
  • io.seqera:lib-platform-oidc 0.1.0
  • io.seqera:tower-api 1.158.0 β†’ [Updates: 1.214.0]
  • com.fasterxml.jackson.dataformat:jackson-dataformat-yaml 2.21.5 β†’ [Updates: 2.22.2]
  • com.fasterxml.jackson.core:jackson-databind 2.21.5 β†’ [Updates: 2.22.2]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-json 4.0.33 β†’ [Updates: 5.1.2]
  • org.wiremock:wiremock-standalone 3.13.2
  • org.json:json 20240303
plugins/nf-wave/build.gradle (13)
  • org.slf4j:slf4j-api 2.0.17 β†’ [Updates: 2.0.19]
  • org.pf4j:pf4j 3.14.1 β†’ [Updates: 3.15.1]
  • io.seqera:lib-trace 0.1.0
  • io.seqera:lib-httpx 2.7.0
  • org.apache.commons:commons-lang3 3.18.0 β†’ [Updates: 3.20.0]
  • io.seqera:lib-httpx 2.7.0
  • org.apache.commons:commons-compress 1.26.1 β†’ [Updates: 1.28.0]
  • com.google.code.gson:gson 2.13.1 β†’ [Updates: 2.14.0]
  • org.yaml:snakeyaml 2.2 β†’ [Updates: 2.7]
  • io.seqera:wave-api 1.31.1 β†’ [Updates: 1.37.0]
  • io.seqera:wave-utils 1.31.1 β†’ [Updates: 1.37.0]
  • org.apache.groovy:groovy 4.0.33 β†’ [Updates: 5.1.2]
  • org.apache.groovy:groovy-nio 4.0.33 β†’ [Updates: 5.1.2]
settings.gradle (1)
  • org.gradle.toolchains.foojay-resolver-convention 1.0.0
gradle-wrapper (1)
gradle/wrapper/gradle-wrapper.properties (1)
  • gradle 9.6.1 β†’ [Updates: 9.7.1]
npm (2)
.docusaurus_site/package.json (29)
  • @docusaurus/core 3.9.2 β†’ [Updates: 3.10.2]
  • @docusaurus/faster 3.10.2
  • @docusaurus/preset-classic 3.9.2 β†’ [Updates: 3.10.2]
  • @docusaurus/theme-mermaid 3.9.2 β†’ [Updates: 3.10.2]
  • @mdx-js/react 3.1.1
  • @seqera/docusaurus-preset-seqera 1.0.39
  • clsx 2.1.1
  • daisyui 5.5.20 β†’ [Updates: 5.7.37]
  • dotenv 17.4.2 β†’ [Updates: 18.0.1]
  • fs-extra 11.3.6 β†’ [Updates: 11.4.0]
  • postcss-import 16.1.1 β†’ [Updates: 16.2.0, 17.0.0]
  • postcss-loader 8.2.1
  • postcss-nesting 14.0.0 β†’ [Updates: 14.0.1]
  • prism-react-renderer 2.4.1
  • react 18.3.1 β†’ [Updates: 19.3.0]
  • react-dom 18.3.1 β†’ [Updates: 19.3.0]
  • rehype-katex 7.0.1
  • remark-code-snippets 1.1.0
  • remark-math 6.0.0
  • remark-sectionize 2.1.0
  • simple-git 3.36.0
  • tailwindcss 4.3.0 β†’ [Updates: 4.3.3]
  • @docusaurus/module-type-aliases 3.9.2 β†’ [Updates: 3.10.2]
  • @docusaurus/types 3.9.2 β†’ [Updates: 3.10.2]
  • node v26.5.0 β†’ [Updates: 26.8.2]
  • form-data 4.0.6
  • js-yaml 4.3.1 β†’ [Updates: 4.3.2]
  • lodash 4.18.1
  • yaml 1.10.3 β†’ [Updates: 2.9.1]
plugins/nf-agent-pi/package.json (2)
  • @earendil-works/pi-coding-agent 0.80.10 β†’ [Updates: 0.85.1]
  • node v26.8.1 β†’ [Updates: 26.8.2]

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up β€” it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the Dependency Dashboard and review the repository's package lookup warning and the many pending update entries. No source files or tests are identified; the work would be complete only when the dependency problems and selected scheduled updates are resolved and the dashboard no longer requires those entries.

Written by the indexing model from the issue text.

Assessment

Tech stack
aws, docker, github-actions, groovy, java, node.js, tailwindcss
Domain
build-system, devops, tooling
Issue type
Refactor
Difficulty
5/5
Estimated time
Over a week
Activity status
Quiet
Clarity
Needs clarification
Newbie friendliness
15/100

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