nextflow-io / nextflow-io/nextflow

Segmentation fault with nextflow run hello

Open
#6,909 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

stale
Dominant language
Groovy
Stars
3.5k
Forks
811
Avg merge
2d 11h
Merged PRs (30d)
61

Description

Hi,

I run into Segmentation fault with nextflow run hello.

I installed nextflow by

mamba create --name nextflow nextflow

and my system is

PRETTY_NAME="Ubuntu 24.04.4 LTS"
NAME="Ubuntu"
VERSION_ID="24.04"
VERSION="24.04.4 LTS (Noble Numbat)"
VERSION_CODENAME=noble
ID=ubuntu
ID_LIKE=debian
HOME_URL="https://www.ubuntu.com/"
SUPPORT_URL="https://help.ubuntu.com/"
BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
UBUNTU_CODENAME=noble
LOGO=ubuntu-logo

Thanks in advance!

Best,
Kun

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reproducing nextflow run hello after installing Nextflow with mamba on Ubuntu 24.04. The issue does not name a source file, test, expected behavior beyond avoiding the segmentation fault, or diagnostic output, so identifying the failing entry point and a clear verification test will require further investigation.

Written by the indexing model from the issue text.

Assessment

Tech stack
ubuntu
Domain
cli, operating-systems
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.