nextflow-io / nextflow-io/nextflow
nextflow run from GitHub gists
Open
Nobody has claimed this yet.
software/git
stale
- Dominant language
- Groovy
- Stars
- 3.5k
- Forks
- 811
- Avg merge
- 2d 11h
- Merged PRs (30d)
- 61
Description
New feature
$ nextflow run https://gist.github.com/6005109f84e6ba48d10631f6741377d9.git
Unable to find a Git provider config for nextflow.scm.GitUrl(https, null, [gist.github.com](http://gist.github.com/), 6005109f84e6ba48d10631f6741377d9)
Usage scenario
MREs: https://youtu.be/Z7EhyT1m2ZQ?si=BjPqrgw6esq7XnWH
Suggest implementation
Just need to add gist.github.com to the scm.GitUrl(famous last words 😆)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the nextflow.scm.GitUrl error shown by nextflow run against the GitHub Gist URL and trace how Git provider configuration is selected. Check the repository's existing SCM tests or entry points for GitHub URL handling. Done means the supplied gist.github.com command is recognized and runs without the provider-config error.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- github, groovy
- Domain
- cli
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100