nestybox / nestybox/sysbox

Container running with sysbox-runc runtime not responding

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Description

Hi,

We're running several containers, where only one of them is run with sysbox-runc runtime. After some time, the container that is running with the sysbox-runc runtime seem to not work properly, and can't be closed (docker rm -f just hangs until timeout is reached).
Meanwhile, the other containers running with the normal runc runtime works properly.

System information:

  • Linux ip-172-31-37-92 5.13.0-1017-aws #19~20.04.1-Ubuntu SMP Mon Mar 7 12:53:12 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
  • Installed shiftfs kernel module based on branch k5.13

Supplying the logs for sysbox-mgr as it does state an error unlike sysbox-fs.
Debug logs from sysbox-mgr.log:

time="2022-04-08 14:00:57" level=info msg="released resources for container 91674898f90d"
time="2022-04-08 14:01:04" level=debug msg="dockerVolMgr: created volume for container 8ec38dddb942"
time="2022-04-08 14:01:04" level=debug msg="k3sVolMgr: created volume for container 8ec38dddb942"
time="2022-04-08 14:01:05" level=debug msg="rke2VolMgr: created volume for container 8ec38dddb942"
time="2022-04-08 14:01:05" level=debug msg="autoRemoveCheck: Docker query start for 8ec38dddb942"
time="2022-04-08 14:01:08" level=debug msg="FIXME: Got an status-code for which error does not match any expected type!!!: -1" module=api status_code=-1
time="2022-04-08 14:01:08" level=debug msg="autoRemoveCheck: Docker query for 8ec38dddb942 failed: Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?"
time="2022-04-08 14:01:08" level=debug msg="marked shiftfs for /var/lib/docker/overlay2/138b4468e27813eee3e9190b5ed2ca3eece8035c10bac04ea4a1b0bb5b9c5ad8/merged at /var/lib/sysbox/shiftfs/021301a4-d28b-4d0c-a3de-06c12efb7c02"
time="2022-04-08 14:04:22" level=debug msg="unmarked shiftfs for /var/lib/docker/overlay2/138b4468e27813eee3e9190b5ed2ca3eece8035c10bac04ea4a1b0bb5b9c5ad8/merged at /var/lib/sysbox/shiftfs/021301a4-d28b-4d0c-a3de-06c12efb7c02"
time="2022-04-08 14:04:22" level=debug msg="kubeletVolMgr: sync'd-out volume for container 8ec38dddb942"
time="2022-04-08 14:04:22" level=debug msg="k0sVolMgr: sync'd-out volume for container 8ec38dddb942"
time="2022-04-08 14:04:22" level=debug msg="buildkitVolMgr: sync'd-out volume for container 8ec38dddb942"
time="2022-04-08 14:04:22" level=debug msg="containerdVolMgr: sync'd-out volume for container 8ec38dddb942"
time="2022-04-08 14:04:23" level=debug msg="dockerVolMgr: sync'd-out volume for container 8ec38dddb942"
time="2022-04-08 14:04:23" level=debug msg="k3sVolMgr: sync'd-out volume for container 8ec38dddb942"
time="2022-04-08 14:04:23" level=debug msg="rke2VolMgr: sync'd-out volume for container 8ec38dddb942"
time="2022-04-08 14:04:23" level=debug msg="added fs watch on /var/lib/docker/overlay2/138b4468e27813eee3e9190b5ed2ca3eece8035c10bac04ea4a1b0bb5b9c5ad8"
time="2022-04-08 14:04:23" level=info msg="unregistered container 8ec38dddb942"
time="2022-04-08 14:04:24" level=debug msg="rootfsMon: rm on /var/lib/docker/overlay2/138b4468e27813eee3e9190b5ed2ca3eece8035c10bac04ea4a1b0bb5b9c5ad8"
time="2022-04-08 14:04:24" level=debug msg="kubeletVolMgr: destroyed volume for container 8ec38dddb942"
time="2022-04-08 14:04:24" level=debug msg="k0sVolMgr: destroyed volume for container 8ec38dddb942"
time="2022-04-08 14:04:24" level=debug msg="buildkitVolMgr: destroyed volume for container 8ec38dddb942"
time="2022-04-08 14:04:24" level=debug msg="containerdVolMgr: destroyed volume for container 8ec38dddb942"

Core dump of sysbox-mgr:
https://easyupload.io/fg546r

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reproducing the container shutdown problem with the sysbox-runc runtime and review sysbox-mgr.log alongside the linked sysbox-mgr core dump. Check the Docker daemon interaction around docker rm -f and the reported shiftfs paths. Done means the affected container remains responsive and can be removed without timing out.

Written by the indexing model from the issue text.

Assessment

Tech stack
docker, linux
Domain
devops, infrastructure
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
30/100

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