navinlabcode / navinlabcode/CellTrek
Customized Plot
Nobody has claimed this yet.
- Dominant language
- R
- Stars
- 135
- Forks
- 23
- PR merge metrics
- No merged PRs in 30d
Description
Dear developers,
It's great that CellTrek provide a interactive way to visulized the results.
I am wondering whether it's possible to plot by ourselves and then we can optimize the figure like the color of dots.
Is it possible to map the cells back to the spots from ST and calculate the ratio of cells in spots?
Best regards
Song
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files, tests, or entry points. First clarify whether the requested scope is customizable plot colors, mapping cells back to spatial-transcriptomics spots, calculating cell ratios, or all three; done should include an agreed plotting interface and validated ratio output.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- bioinformatics, data-visualization
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100