navinlabcode / navinlabcode/CellTrek

Error while running CellTrek:celltrek function

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Dominant language
R
Stars
135
Forks
23
PR merge metrics
No merged PRs in 30d

Description

Hi,
while running the cell trek package, especially at the CellTrek::celltrek function, I'm getting the following error (shown in the [screenshot)] and attached my R script screenshot too along with SessionInfo. It would be a great help to know how to fix this.

Screenshot 2022-10-04 at 1 44 28 PM

Screenshot 2022-10-04 at 2 06 52 PM

Best Regards,
Pratap,
Bioinformatician,
NCCS,
Singapore

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Research direction

Start by reproducing the failure at the CellTrek::celltrek entry point using the attached R script and SessionInfo. Inspect the error shown in the screenshots and trace it to the relevant package behavior; done means identifying the cause and confirming a fix with the reported workflow.

Written by the indexing model from the issue text.

Assessment

Tech stack
r
Domain
bioinformatics
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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