navinlabcode / navinlabcode/CellTrek
Assigning all single cells
Nobody has claimed this yet.
- Dominant language
- R
- Stars
- 135
- Forks
- 23
- PR merge metrics
- No merged PRs in 30d
Description
Dear CellTrek Team
I wonder whether there is a way to force assign all single cells to a spatial location? I tried to change dist_thresh=0.55 to dist_thresh=2, but still didn't get all my single cells with at least one position assigned. May I ask 2hat would be a setting so that all cells could be assigned? Thank you!
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No source files, tests, or entry points are identified in the issue. Start by locating the assignment logic and its distance-threshold handling, then determine whether forcing every single cell to receive a spatial position is supported and what behavior should count as complete.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100