navinlabcode / navinlabcode/CellTrek
Question about Supplementary Figure 7e
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- Dominant language
- R
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- 135
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Description
Hello CellTrek,
Congratulations for this tools, which seems impressive!
I tried understanding supp.fig-7e,
You've identified the three tumor subclones locations, and five clusters by unsupervised learning, right?
Then, you validate results by G.E. based spearman correlation analysis.
How to create matrix based on clustering? By mean gene expression ? and how to select gene ?
Can you please post the code or pseudo code to this analysis?
Thanks in advance,
Chuang
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Research direction
Start by tracing the analysis behind Supplementary Figure 7e and any available CellTrek analysis materials. Determine how the clustering matrix, gene selection, and Spearman correlation validation were produced, then document the procedure or pseudocode so another researcher can reproduce the figure.
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Assessment
- Tech stack
- r
- Domain
- bioinformatics, documentation
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100