navinlabcode / navinlabcode/CellTrek
How to keep all the metadata from the seurat traint object after running CellTrek::celltrek()
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- Dominant language
- R
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- 135
- Forks
- 23
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Description
Hi,
Wonderful tool, congrats!
I was wondering if/how one can keep all the metadata belonging to the seurat traint object (including metadata retrieved from the Visium object)?
After running CellTrek::celltrek(), only the metadata from the scRNA-seq object remains in the object.
Thanks a lot in advance!
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the CellTrek::celltrek() entry point and inspect how metadata from the Seurat train and Visium objects is handled. Compare the metadata before and after the call; done means the resulting object retains the requested metadata from both inputs.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100