Show warning when ids are dropped because under threshold
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- R
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Description
Currently ids are dropped without warning if it has no partners with connectivity above threshold (default is threshold = 5).
It would be useful to show a warning.
In the example below, the id 720575940622805700 is dropped.
cf_cosine_plot(cf_ids(malecns = "/type:DNge15(4|6)"
,
flywire = c("720575940622805700", "720575940636671886")),
labRow = "{type}_{coconatfly::abbreviate_datasets(dataset)}_{group}_{side}",
interactive = FALSE
, margins = c(15,10)
)
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Research direction
Start by tracing the cf_cosine_plot and cf_ids entry points using the example in this issue, then locate where IDs without partners above the threshold are discarded. Confirm the default threshold of 5 and the example ID's behavior. Done means a warning identifies dropped IDs without changing the existing filtering behavior.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100