nasa / nasa/GeneLab_Data_Processing
[BulkRNASeq] Combine MultiQC reports
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Description
MultiQC reports are currently generated separately for each tool. Perhaps combine into one or two reports (e.g., FASTQC/Trim Galore! into one report where metrics are reported at read-level, STAR/RSeQC/RSEM in another where metrics are reported at sample-level)
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files, tests, or pipeline entry points. First locate the BulkRNASeq workflow and its MultiQC generation steps, then determine how FASTQC/Trim Galore! and STAR/RSeQC/RSEM outputs are currently separated. Done means the requested read-level and sample-level reports are combined and the workflow still produces valid MultiQC output.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- bioinformatics
- Domain
- bioinformatics, data-engineering
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100