nasa / nasa/GeneLab_Data_Processing
[Metagenomics Illumina] Some datasets have too many files in the MAGs and bins folders
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Description
Some datasets can have over 1,000 files in the MAGs and bins folders of the Assembly-based_processing directories (for example: https://genelab-tools.arc.nasa.gov/jira/browse/GLDATAPROC-694). There's no need to have all of them available individually.
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the Assembly-based_processing directories and the example linked in GLDATAPROC-694 to measure how MAGs and bins outputs are currently organized. Determine the intended replacement for exposing more than 1,000 files and define how completion will be verified across affected datasets.
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Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100