nasa / nasa/GeneLab_Data_Processing
[BulkRNASeq] Update default publish output directory when processing GLDS data
Open
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 125
- Forks
- 65
- PR merge metrics
- No merged PRs in 30d
Description
Description
Current default output directory is named after GLDS ID; however, with release of OSDR, the default directory should indicate both the OSDR and GLDS IDs by default.
Proposed Solution
New default directory of OSD-###_GLDS-###
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at the BulkRNASeq processing entry point and locate where the default publish output directory is assembled for GLDS data. Update the default naming to include both the OSDR and GLDS IDs in the form OSD-###_GLDS-###, then verify the resulting publish path.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100