nasa / nasa/GeneLab_Data_Processing
Getting error in the GTDB step.
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Description
Hi,
I am getting an error while running the GTDB step. I am attaching the log file. It seems like Prodigal failed due to an error "AttributeError: module 'numpy' has no attribute 'bool'". Please help. Thank you.
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Research direction
Start by reading the attached gtdbtk-run.log and the reported Prodigal traceback, then inspect the environment used by the GTDB step for its Python and NumPy versions. Done means the GTDB step runs past Prodigal without the reported NumPy AttributeError.
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Assessment
- Tech stack
- numpy, python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100