nasa / nasa/GeneLab_Data_Processing

[bulkRNASeq] NF_RCP 2.0.0 - post-processing fails after with user-provided runsheet_path

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Since May 23, 2025.

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Description

Describe the bug
Post-processing workflow fails on run folder created by main workflow that was started with a run sheet rather than an accession number.

To Reproduce
Steps to reproduce the behavior:

  1. Run NF_RCP 2.0.0 main workflow with --runsheet_path </path/to/runsheet> as in Approach 3 in README.md
  2. Run NF_RCP 2.0.0 post processing workflow using -entry POST_PROCESSING

Expected behavior
The post-processing workflow should be able to find the runsheet path based on the runsheet_path parameter

Additional context

  • Assay: bulkRNASeq
  • Workflow: NF_RCP
  • Workflow version: 2.0.0

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