nasa / nasa/GeneLab_Data_Processing
[Microarray] Add option to skip DE step during processing
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- Dominant language
- Jupyter Notebook
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- 125
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- 65
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Description
Description
Some datasets may only have 1 replicate per factor group, so DE analysis would not be possible.
Solution
Add option (e.g., --skipDE) to run workflow without the DE steps.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the Microarray processing workflow and the existing DE steps, then inspect how processing options are defined. Add the requested option so the workflow can run without DE analysis, and verify that datasets with one replicate per factor group complete successfully.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100