moltools / moltools/RetroMol-GUI
Add different readout options for importing GenBank files
A pull request for this has already been merged.
- #21 by @davidmeijer — merged
- Dominant language
- TypeScript
- Stars
- 1
- Forks
- 0
- PR merge metrics
- No merged PRs in 30d
Description
Currently, all GenBank files are imported and readout first on candidate cluster level and then on gene level. This means that every gene and its functional domains become a separate primary sequence in the multiple sequence alignment (MSA) view.
The underlying biocracker package allows for either region or cand_cluster readout for the top level, and either rec or gene level for the sub level.
Add appropriate buttons in the import GenBank dialog window that allows to switch between these different readout levels.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start in the import GenBank dialog and compare its current readout handling with the biocracker antismash.py and readout.py references in the issue. Add controls for the region/cand_cluster and rec/gene choices. Done means the dialog exposes the supported readout combinations and imports using the selected levels.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- typescript
- Domain
- frontend
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 30/100