QUESTION: is SSH + BSUB (LSF) available?
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Description
Hi,
I am curious if I could use batchtools on my local machine and submit jobs through SSH (using BSUB with LSF queueing system) on a remote cluster?
This would be a combination of clusterFunctionLSF and clusterFunctionSSH, but I haven't found such thing implemented yet, right?
I really would like to work on my local machine (in Rstudio) and do the computation on the cluster.
ClusterFunctionSSH is not a solution, because I am not allowed to do computation/memory heavy tasks on the front end (as far as I understood clusterFunctionsSSH together with the worker does not use the queue system, but I might missed something here. ).
Looking forward to your suggestion,
Thanks and Kind Regards,
Attila
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the clusterFunctionLSF and clusterFunctionSSH entry points mentioned in the issue, then determine how remote submission and LSF queueing currently interact. Done would require a decided design and either documented support or an implemented, tested combination for submitting jobs from a local RStudio session.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- hpc
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100