matplotlib / matplotlib/basemap

Cygwin install error: error: 'isnan' was not declared in this scope

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Description

Dear all,

after struggling with the installation of basemap I decided to post here. I have tried a couple of different 'hacks' found in google but none worked.

Full error:

> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../include -I../../../include/geos -I../../../include -DGEOS_INLINE -pedantic -Wall -ansi -Wno-long-long -ffloat-store -g -O2 -MT IndexedPointInAreaLocator.lo -MD -MP -MF .deps/IndexedPointInAreaLocator.Tpo -c IndexedPointInAreaLocator.cpp -DDLL_EXPORT -DPIC -o .libs/IndexedPointInAreaLocator.o
> In file included from ../../../include/geos/geom/Geometry.h:26:0,
> from IndexedPointInAreaLocator.cpp:18:
> ../../../include/geos/geom/Coordinate.inl: In member function 'bool geos::geom::Coordinate::isNull() const':
> ../../../include/geos/platform.h:88:27: error: 'isnan' was not declared in this scope
> # define ISNAN(x) (isnan(x))
> ^
> ../../../include/geos/geom/Coordinate.inl:39:10: note: in expansion of macro 'ISNAN'
> return (ISNAN(x) && ISNAN(y) && ISNAN(z));
> ^
> ../../../include/geos/platform.h:88:27: note: suggested alternative:
> # define ISNAN(x) (isnan(x))
> ^
> ../../../include/geos/geom/Coordinate.inl:39:10: note: in expansion of macro 'ISNAN'
> return (ISNAN(x) && ISNAN(y) && ISNAN(z));
> ^
> In file included from ../../../include/geos/geom/Coordinate.inl:23:0,
> from ../../../include/geos/geom/Coordinate.h:161,
> from ../../../include/geos/geom/Envelope.h:26,
> from ../../../include/geos/geom/Geometry.h:28,
> from IndexedPointInAreaLocator.cpp:18:
> /usr/lib/gcc/x86_64-pc-cygwin/5.4.0/include/c++/cmath:862:5: note: 'std::isnan'
> isnan(_Tp __f)
> ^
> In file included from ../../../include/geos/geom/Geometry.h:26:0,
> from IndexedPointInAreaLocator.cpp:18:
> ../../../include/geos/geom/Coordinate.inl: In member function 'bool geos::geom::Coordinate::equals3D(const geos::geom::Coordinate&) const':
> ../../../include/geos/platform.h:88:27: error: 'isnan' was not declared in this scope
> # define ISNAN(x) (isnan(x))
> ^
> ../../../include/geos/geom/Coordinate.inl:83:21: note: in expansion of macro 'ISNAN'
> ((z == other.z)||(ISNAN(z) && ISNAN(other.z)));
> ^
> ../../../include/geos/platform.h:88:27: note: suggested alternative:
> # define ISNAN(x) (isnan(x))
> ^
> ../../../include/geos/geom/Coordinate.inl:83:21: note: in expansion of macro 'ISNAN'
> ((z == other.z)||(ISNAN(z) && ISNAN(other.z)));
> ^
> In file included from ../../../include/geos/geom/Coordinate.inl:23:0,
> from ../../../include/geos/geom/Coordinate.h:161,
> from ../../../include/geos/geom/Envelope.h:26,
> from ../../../include/geos/geom/Geometry.h:28,
> from IndexedPointInAreaLocator.cpp:18:
> /usr/lib/gcc/x86_64-pc-cygwin/5.4.0/include/c++/cmath:862:5: note: 'std::isnan'
> isnan(_Tp __f)
> ^
> make[4]: **\* [Makefile:373: IndexedPointInAreaLocator.lo] Error 1
> make[4]: Leaving directory '/tmp/basemap/geos-3.3.3/src/algorithm/locate'
> make[3]: **\* [Makefile:392: all-recursive] Error 1
> make[3]: Leaving directory '/tmp/basemap/geos-3.3.3/src/algorithm/locate'
> make[2]: **\* [Makefile:444: all-recursive] Error 1
> make[2]: Leaving directory '/tmp/basemap/geos-3.3.3/src/algorithm'
> make[1]: **\* [Makefile:476: all-recursive] Error 1
> make[1]: Leaving directory '/tmp/basemap/geos-3.3.3/src'
> make: **\* [Makefile:368: all-recursive] Error 1

I am installing it on cygwin 64 bits.

I have also tried to use cygwin's binaries but they give errors on a tested script.

I am not sure of any additional relevant information.

Best regards,

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by reproducing the Cygwin 64-bit installation and inspect the failing build in geos-3.3.3/src/algorithm/locate/IndexedPointInAreaLocator.cpp. Read ../../../include/geos/platform.h and ../../../include/geos/geom/Coordinate.inl around the ISNAN usage, then verify that the basemap installation completes and the reported script can run.

Written by the indexing model from the issue text.

Assessment

Tech stack
cpp, python
Domain
build-system, operating-systems
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
30/100

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