lmcinnes / lmcinnes/umap

Python module umap was not found

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Python
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Description

I am using UMAP and i have been getting this error. Does anyone know how i can fix it.Thanks

>flowDF_scaled <- scale(flowDF2, scale = TRUE, center = TRUE)
> flowDF_scaled.umap <- umap(flowDF_scaled, method = "umap-learn", verbose = TRUE)
Error: Python module umap was not found.

Detected Python configuration:

python: /usr/bin/python
libpython: /System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/config/libpython2.7.dylib
pythonhome: /System/Library/Frameworks/Python.framework/Versions/2.7:/System/Library/Frameworks/Python.framework/Versions/2.7
version: 2.7.16 (default, Feb 28 2021, 12:34:25) [GCC Apple LLVM 12.0.5 (clang-1205.0.19.59.6) [+internal-os, ptrauth-isa=deploy
numpy: /Users/anjellinarukundo/Library/Python/2.7/lib/python/site-packages/numpy
numpy_version: 1.14.5
umap: [NOT FOUND]

python versions found:
/Users/anjellinarukundo/.virtualenvs/r-reticulate/bin/python
/usr/bin/python
/usr/bin/python3

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Research direction

The issue names no repository files or tests; start by reproducing the reported R-to-Python configuration, including the detected Python 2.7 environment and the available virtualenv. Determine whether the missing umap module reflects an unsupported environment or a configuration problem. Done means a confirmed cause and a reproducible fix or documented resolution.

Written by the indexing model from the issue text.

Assessment

Tech stack
python, r
Domain
machine-learning
Issue type
Bug
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
15/100

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