Can't find RunUMAP() function in R studio after installing umap-learn package
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Description
Hi,
I tried to use Conda install or pip install to install umap-learn package. Both of them worked very well and the packages has been successfully installed.
However, it can'be recognised by R studio no matter how I set the environment. I also did what they suggested in this issue (https://github.com/satijalab/seurat/issues/1020). None of these suggestions worked for me.
Could you give me some suggestion to help me work out this problem?
pip show umap-learn result shown below:
C:\Users\Feng Tang\Pictures\singcellExperiment2>pip show umap-learn
Name: umap-learn
Version: 0.5.1
Summary: Uniform Manifold Approximation and Projection
Home-page: http://github.com/lmcinnes/umap
Author: None
Author-email: None
License: BSD
Location: d:\python\lib\site-packages
Requires: numpy, scikit-learn, pynndescent, scipy, numba
Required-by:
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the reported umap-learn 0.5.1 installation using the shown pip commands and checking which Python environment RStudio uses. Investigate the RunUMAP() entry point and compare that environment with the one reported by pip show; done means RStudio recognizes the function.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python, r
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100