RunUMAP-- pip install umap-learn
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Description
Hi-- I have tried to follow up SCTransform tutorial but I got an issue with RunUMAP step. I working on the server. R version 3.6. Would you mind letting me know how I can install it. I have tried following methods:
- https://github.com/satijalab/seurat/issues/1020
- https://github.com/lmcinnes/umap/tree/4ac190d8c6804b25d6c7861b2aac2971027c5508
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the linked Seurat issue and the referenced umap commit to identify the installation path relevant to an R 3.6 server. Reproduce the reported RunUMAP setup problem if possible, then document the supported installation guidance and how a user can confirm it works.
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Assessment
- Tech stack
- python, r
- Domain
- documentation, machine-learning
- Issue type
- Documentation
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100